« Back to Solanum lycopersicum search


Detailed information on CNT30510868


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 1e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Solanum lycopersicumSetaria italica28.85888.3360forward
CNT3021362Solanum lycopersicumCitrullus lanatus88.9428.4286.49185forward
CNT30727603Solanum lycopersicumCorchorus capsularis80.2933.8185.63167forward
CNT30524728Solanum lycopersicumPhaseolus vulgaris91.8335.3780.63191forward
CNT30710642Solanum lycopersicumGlycine max70.1915.6182.88146forward
CNT30182233Solanum lycopersicumSecale cereale83.1727.8181.5173forward
CNT30222279Solanum lycopersicumHordeum vulgare68.2747.0283.8142forward
CNT30244810Solanum lycopersicumAvena sativa68.7517.783.22143forward
CNT3066796Solanum lycopersicumLeersia perrieri67.3135.9982.86140forward
CNT30341003Solanum lycopersicumEragrostis tef71.6360.5781.88149forward
CNT30595456Solanum lycopersicumOryza meridionalis83.1730.3580.92173forward
CNT30358465Solanum lycopersicumLactuca sativa94.7118.8989.34197forward
CNT30580107Solanum lycopersicumEchinochloa crusgalli83.1733.3379.77173forward
CNT30497454Solanum lycopersicumDigitaria exilis68.7538.4481.82143forward
CNT30594668Solanum lycopersicumEragrostis curvula71.6344.2183.89149forward
CNT30174824Solanum lycopersicumVigna angularis93.2720.4282.99194forward
CNT30723923Solanum lycopersicumLupinus angustifolius77.478.5485.71161forward

Expression of CNT30510868

Peptides detected in this lncRNA

>peptide 1 (46 aa)
WIHMTPICFLLRMLKRITINLTCTGKQELSTNSLGKPQHVKGAHHI*

Sequence

>CNT30510868
ATTGGATTCACATGACCCCAATATGTTTCCTTTTGAGGATGCTCAAGCGGATCACCATAAACCTCACTTGTACTGGTAAGCAAGAACTTAGCACCAATTC
TCTTGGCAAGCCCCAACATGTTAAGGGTGCCCATCACATTTGATATAATAGTTTTGACAGGATTATACTTGTAGTGAACTGGAGAAGCAGGACAAGCCAA
ATGGTAAA