Detailed information on CNT30510843


BLAST search results

BLAST vs Swiss-Prot:
sp|P49693|RL193_ARATH, E-value = 1e-29

BLAST vs NONCODE:
NONZMAT002171, E-value = 2e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547889Solanum lycopersicumIpomoea triloba75.2378.0488.62167forward
CNT30728407Solanum lycopersicumCorchorus capsularis65.7721.5789.73146forward
CNT30146432Solanum lycopersicumMedicago truncatula75.6861.7685.71168forward
CNT30437225Solanum lycopersicumAegilops tauschii71.6252.8284.91159forward
CNT3076118Solanum lycopersicumBrassica juncea20.272.9995.5645reverse complement

Expression of CNT30510843

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MFSMRTRLFLKTLPFTFMYISWYMCLSIFLDSLYLRSKRLRTLSLLIHSTFVPYPE*

>peptide 2 (73 aa)
CRLYWLLSCLLSLGFVNVLHENTLVLEDITLHLHVHIMVHVLVNLLGLPVLTKQTPEDSESPHPQHLCTISRVT

Sequence

>CNT30510843
TGCAGGTTGTACTGGCTTCTCTCCTGCCTTCTCAGCCTTGGTTTTGTGAATGTTCTCCATGAGAACACGCTTGTTCTTGAAGACATTACCCTTCACCTTC
ATGTACATATCATGGTACATGTGCTTGTCAATCTTCTTGGACTCCCTGTACTTACGAAGCAAACGCCTGAGGACTCTGAGTCTCCTCATCCACAGCACCT
TTGTACCATATCCAGAGTGACG