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Detailed information on CNT30510842


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 7e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554621Solanum lycopersicumOryza glaberrima26.166.0595.77142forward
CNT3068134Solanum lycopersicumLeersia perrieri43.9366.0292.05239reverse complement
CNT30126841Solanum lycopersicumCorymbia citriodora46.8868.5592.55255forward
CNT30714892Solanum lycopersicumMalus domestica golden25.3719.888.41138forward
CNT30363927Solanum lycopersicumSorghum bicolor25.3734.2495.65138forward
CNT30370808Solanum lycopersicumOryza glumipatula26.165.4495.77142forward
CNT30603500Solanum lycopersicumOryza punctata11.0323.3593.3360forward

Expression of CNT30510842

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MGDKLHRREGNNPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP*

>peptide 2 (65 aa)
LYSEGALRRVDELIRLAYFLYLCGYGGNLALSTGASHKGIGLNVDIYRLSADLSKPCFAIKLEKD*

Sequence

>CNT30510842
ACCTATATAGTGAGGGTGCGTTAAGGCGAGTTGATGAGCTAATACGACTGGCTTACTTTTTATATTTATGTGGATATGGAGGGAACTTGGCGTTAAGCAC
TGGGGCCAGCCACAAAGGAATAGGTTTGAATGTTGATATATACCGTCTTTCAGCTGACCTTTCAAAACCATGCTTCGCGATCAAGCTAGAAAAAGACTAA
GCAAGTGTTGTCCTTATTAAATGGCGGATAGCTTAGAATAACATTCATTCCTGAACATCGCTGCCTACTTAAGACATTTCGATGCGGCCCGCGAGAGAGG
TACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCAAGGTCAGCTAGTGAGACGATGGGGGATAAGCTTCATCGCCGAGA
GGGAAACAACCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAACCAGGAGGTTTGCCTAGAAGCAGC
CACCCTTGAAAGAGTGCGTAATAGTTCACTGATCGAGGGAGTAG