Detailed information on CNT30510815


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30529029Solanum lycopersicumEucalyptus grandis53.4612.4590.2255forward
CNT30618959Solanum lycopersicumSesamum indicum51.363.8991.84245forward
CNT3020650Solanum lycopersicumCitrullus lanatus50.3113.7989.58240forward
CNT30730408Solanum lycopersicumCorchorus capsularis50.3150.7488.33240forward
CNT30632355Solanum lycopersicumVigna unguiculata51.7828.4689.07247forward
CNT30201085Solanum lycopersicumPisum sativum50.3111.8887.92240forward
CNT3047566Solanum lycopersicumPrunus dulcis53.2513.1790.16254forward
CNT3093400Solanum lycopersicumSolanum tuberosum37.116.1791.53177forward
CNT30194121Solanum lycopersicumSecale cereale50.3126.8287.92240forward
CNT30390237Solanum lycopersicumTriticum turgidum53.4611.887.06255forward
CNT30589320Solanum lycopersicumMusa acuminata29.7729.2287.32142forward
CNT30237795Solanum lycopersicumBrassica oleracea51.786.4490.69247forward
CNT30556045Solanum lycopersicumOryza glaberrima46.966.8688.84224forward
CNT30171250Solanum lycopersicumTrifolium pratense20.3426.5890.7297forward
CNT30598583Solanum lycopersicumFraxinus excelsior23.2711.1492.79111forward
CNT30446760Solanum lycopersicumSaccharum spontaneum53.4622.5989.41255forward
CNT3018049Solanum lycopersicumZea mays53.467.6989.02255forward
CNT30232528Solanum lycopersicumAnanas comosus50.3112.1388.75240forward
CNT30217417Solanum lycopersicumKalanchoe fedtschenkoi46.9647.8691.07224forward
CNT30655383Solanum lycopersicumRosa chinensis53.257.0988.58254forward
CNT30214788Solanum lycopersicumHelianthus annuus21.3831.9784.31102forward
CNT30595988Solanum lycopersicumOryza meridionalis53.4624.489.41255forward
CNT3022800Solanum lycopersicumPopulus trichocarpa46.5465.2990.99222forward
CNT30103542Solanum lycopersicumOryza rufipogon49.6933.4388.19237forward
CNT30604206Solanum lycopersicumOryza punctata38.5746.2385.87184forward

Expression of CNT30510815

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MHMLKAYLVLVVTLLHFSFFLSIVEIVTRNDRSRSYY*

Sequence

>CNT30510815
CTAAATTCTAAATAAAAAGATAAAATACTAGACTAAGATTCTAAGTAAAGGATAATAAAGCTTTATATCCATAGAAAAGTTGCTAGGCATTTTCATTTTT
TCTTATTTTGACTTCTATGAAGTTTCATTATTTGCTAAACAGATAAAAATCGTTGTTTTAGACGATGCATATGTTGAAAGCCTATTTGGTTCTAGTAGTT
ACTTTACTACATTTTTCTTTTTTTCTTTCTATAGTGGAGATAGTCACACGTAATGATAGATCACGATCATATTATTAAAAGTTTGTGGTAATAATGGGTT
TCATTCTAATGCTCGAAAATAATATTCCAAAGCTTTCGTATGTTCTCCATTACTTGTGTGGATAAGCCCTATATTATAGTATATAACTTCTATCATAGGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGCAAAGCTTTCGCGTAATTTCCTTCAAATTGAGCCAACATCC