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Detailed information on CNT30510805


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272829Solanum lycopersicumChenopodium quinoa26.5626.3888.8981forward
CNT30406606Solanum lycopersicumBeta vulgaris26.5626.2187.6581forward
CNT30525537Solanum lycopersicumPhaseolus vulgaris21.3121.3187.6965forward
CNT3044357Solanum lycopersicumPrunus dulcis23.6123.6888.8972forward
CNT30634223Solanum lycopersicumCapsicum annuum95.7410085.62292reverse complement
CNT3096133Solanum lycopersicumSolanum tuberosum100100.6690.82305forward
CNT30538639Solanum lycopersicumBrassica napus25.925.9986.0879forward
CNT30235726Solanum lycopersicumBrassica oleracea24.9224.8486.8476forward
CNT30262041Solanum lycopersicumBrassica rapa25.925.986.0879forward
CNT30654098Solanum lycopersicumRosa chinensis23.2822.990.1471forward
CNT3029804Solanum lycopersicumTheobroma cacao26.2326.0687.580forward
CNT3024649Solanum lycopersicumPopulus trichocarpa20.6620.8692.0663forward

Expression of CNT30510805

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MWWNVGLTQMVGFGRLIVWPALSKHGVGSRGLVERPGCLIPKVGWTA*

Sequence

>CNT30510805
GCCGAGCTCAGTAGCGTGGGCTTATAACCCGAGTGGGGGCATTAATGTGGTGGAATGTTGGGTTGACCCAGATGGTTGGGTTCGGTAGGCTTATAGTCTG
GCCTGCCCTCTCCAAGCATGGAGTTGGATCACGTGGCTTAGTCGAAAGACCAGGTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCAC
AGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACGCCTGATGGGCTGCTCCAACTAAACCACCA
CTTTT