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Detailed information on CNT30510689


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001009, E-value = 5e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30588877Solanum lycopersicumMusa acuminata10.4521.9891.6760reverse complement
CNT30596972Solanum lycopersicumOryza meridionalis22.6510.3985.38130forward
CNT30103640Solanum lycopersicumOryza rufipogon22.6516.9985.38130forward

Expression of CNT30510689

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLPISTSRLGLTHNTEPLGVAFCLILESIVAT*

>peptide 2 (29 aa)
VVSCPNHSCSPKPAKKRANLEQSFRVVDS*

>peptide 3 (31 aa)
MNKNNNKKESNRTISVIGKCLFFYESCRNYS*

Sequence

>CNT30510689
TGGTTGTTTCTTGTCCCAACCATTCTTGTAGTCCCAAGCCCGCTAAGAAAAGGGCTAACTTAGAACAAAGTTTTCGTGTTGTTGATTCCTAGGTGTAGAG
CTTCTTCCCCTATGCTGCCTATTAGCACTAGTAGATTAGGATTGACCCATAATACTGAACCTCTAGGCGTAGCCTTTTGCTTAATACTAGAATCTATTGT
TGCAACATAGCATCTGAGGTTGCATTAATCGAGTATACACGACAGAAGGAATTGTTCAATTTCCAAACTTCACCTTCAAAAAGCGTAGAGTTTTTTTCTC
GAATCATGTGTTTTTAGCCTTGTAAGACAGAGAGAAATGAATAAAAATAATAATAAAAAAGAATCAAATCGCACCATCTCTGTAATAGGTAAATGCCTCT
TTTTCTACGAAAGTTGTCGGAATTACTCTTAATAAGATATCGACTACAATCGAAAAGGTCTTATCAATAAAATTTCCATTTATCCGTGATCTAGGCATAG
GTAGCAATCCATTCTAGAATTCTTTTCATTACCTCTCGTGGGAAAAAGATCCCACAAAGAAAAGTATGTATAGT