« Back to Solanum lycopersicum search


Detailed information on CNT30510528


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONSLYT002586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Solanum lycopersicumSetaria viridis19.5733.8786.11252forward
CNT30640134Solanum lycopersicumNymphaea colorata25.748.1186.4331forward
CNT30547471Solanum lycopersicumIpomoea triloba19.3346.0385.94249forward
CNT30512774Solanum lycopersicumJuglans regia73.9176.2883.4952forward
CNT30373037Solanum lycopersicumArabidopsis thaliana55.5935.1583.24716forward
CNT3019595Solanum lycopersicumCitrullus lanatus38.8290.0982.6500forward
CNT30728649Solanum lycopersicumCorchorus capsularis32.1438.0287.68414forward
CNT3071371Solanum lycopersicumQuercus suber17.9380.4988.74231forward
CNT30405829Solanum lycopersicumBeta vulgaris43.7968.2883.16564forward
CNT30636551Solanum lycopersicumCapsicum annuum34.5567.4295.51445forward
CNT30192963Solanum lycopersicumSecale cereale19.847.7584.71255forward
CNT30224330Solanum lycopersicumHordeum vulgare37.510083.85483forward
CNT30543621Solanum lycopersicumBrassica napus11.9660.1687.01154forward
CNT30143750Solanum lycopersicumMedicago truncatula25.3142.5687.73326forward
CNT30441049Solanum lycopersicumAegilops tauschii26.7191.0184.59344forward
CNT30665536Solanum lycopersicumTriticum dicoccoides5097.7284.16644forward
CNT30309902Solanum lycopersicumCamelina sativa63.9872.6681.07824forward
CNT30263621Solanum lycopersicumBrassica rapa43.4847.3484.46560forward
CNT30612239Solanum lycopersicumArabis alpina99.4648.7882.121281forward
CNT30445994Solanum lycopersicumSaccharum spontaneum94.2585.2582.621214forward
CNT301916Solanum lycopersicumZea mays30.295.5882.52389forward
CNT30212259Solanum lycopersicumHelianthus annuus28.855.6284.91371forward
CNT30716232Solanum lycopersicumMalus domestica golden82.8480.4784.351067forward
CNT30479087Solanum lycopersicumArabidopsis halleri13.7460.8284.75177forward
CNT30361875Solanum lycopersicumSorghum bicolor37.2743.5284.17480forward
CNT30705326Solanum lycopersicumPrunus avium73.7673.9383.58950forward
CNT3054398Solanum lycopersicumAmborella trichopoda33.2362.3978.74428forward
CNT3024028Solanum lycopersicumPopulus trichocarpa25.4744.3885.67328forward
CNT30119815Solanum lycopersicumCitrus clementina28.7380.6185.95370forward
CNT30557952Solanum lycopersicumPanicum hallii31.3749.5783.42404forward

Expression of CNT30510528

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MATVLPQGTSSTVSCLLPIQITVRWIFLTYRSFFSPGT*

>peptide 2 (45 aa)
MGDDISSFLEEQYLREARSASHASSVPCPSNLFHQISWLHQASAT*

>peptide 3 (62 aa)
IISAPPIKSSCKSFRQISRWSSPAPAIICSPDSSIEQTTIGSDLARRFNPSTSLGRSDATLH*

>peptide 4 (70 aa)
YNFSTAHKVILQILQTDLKVEFSGTSNNMLSRLFNRTNNHRIRLSQTFQPFDKLGKVRCDLALNSYTHNW*

>peptide 5 (33 aa)
MILTFIPVETFPANTRPKAKNLPLSDAGIIFDT*

Sequence

>CNT30510528
TTATAATTTCAGCACCGCCCATAAAGTCATCCTGCAAATCCTTCAGACAGATCTCAAGGTGGAGTTCTCCGGCACCAGCAATAATATGCTCTCCAGACTC
TTCAATAGAACAAACAACCATAGGATCAGACTTAGCCAGACGTTTCAACCCTTCGACAAGCTTGGGAAGGTCAGATGCGACCTTGCACTGAACAGCTACA
CGCACAACTGGTGAGACAGAAAACTTCATTGCTCTGATAGGGTGAGCATCGACTTCCTTTTCATTGGTCAATGTTGCATTCTTGGTAATAAACTGATCCA
AACCAACCATGGCAACAGTGTTACCACAGGGAACATCCTCAACAGTTTCTTGCCTCTTACCCATCCAAATAACAGTTCGCTGGATATTCTTAACATATAG
ATCCTTCTTTTCACCAGGAACATAGTTAGGACCCATGATTCTGACCTTCATACCAGTAGAAACCTTCCCAGCAAATACACGACCAAAAGCGAAGAATCTA
CCCTTGTCAGATGCTGGAATCATCTTTGATACATAAAGCATAAGCGGCCCTTCTGGGTCACAGTTCCTGATAGCATTAGCATAAGCATCATCAAGTGGTC
CCTCGTACAAGTTCTCCACACGGTATTTTTGAGCTGTGGACGGTGATGGGAGATGATATATCATCATTTCTAGAAGAGCAGTACTTGCGGGAAGCCAGGT
CTGCATCACACGCTTCATCAGTGCCTTGCCCATCAAATCTTTTTCATCAGATTTCATGGTTACACCAAGCTTCTGCAACATAGGCCAGAGCTTATCTTTC
TGATCGTTCATGCAAGTGTTGATAATCTGCTTAATTGGCTCATAGCAGAATTGAACAAACCCACGCTTGCACGAAGCTGTCCCGGTGTTTTTTGTGGTCC
ACTTTTTGGTGGCAGGGTCAAAAAAGTTCTCACCCCACAGCCTCTCCATCATCTTAGACTCATCAACACCAAATTTGGAAGCATACATCTTGGCAAAATT
GGTGAGAGTGAAAGCCCACCCATGCAACCCAGCTGAGAAAGCAACGGTACCTTTCTCAGGATAAACCTGGACATCACCAAGAAGGGGATCCTCATATGTA
GCCATGATAACATTAGCATTCTCAATAACTCTTTGGAATGTCTGATAGGCCTCCTCTCCATCAACCTGAAGCTCGAGGAAACACCTGTCCATCTTGTTAA
CTGTCAAGACAGGACGAATCCTTTCACCAAGGGCCTGACGGAGCACAGTCTCTGTCTGGACACAGACACCTTCCACACAATCAACCAC