« Back to Solanum lycopersicum search


Detailed information on CNT30510416


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071370Solanum lycopersicumQuercus suber55.6578.0583.33192forward

Expression of CNT30510416

Peptides detected in this lncRNA

>peptide 1 (31 aa)
DESFHQGLDGAQSLSGHRHLPHNQPQQAHRQ*

>peptide 2 (40 aa)
TNPFTKGLTEHSLCLDTDTFHTINHNKRTVSNTKSSSHFR*

Sequence

>CNT30510416
GACGAATCCTTTCACCAAGGGCTTGACGGAGCACAGTCTCTGTCTGGACACAGACACCTTCCACACAATCAACCACAACAAGCGCACCGTCAGTAATACG
AAGAGCAGCAGTCACTTCAGATGAGAAGTCAACGTGCCCAGGTGAATCGATGAGAAGTCAACGTGCCCAGGTGAATCGATGAGGTTGATGAGGTACTCGT
TCCCATTTCTCTCTCCCTTGAAGTTCCTCAAGGAGTCATCAGTCATCTCGTAGTAAAGTGAAATACCAGTGGACTTGATGGTGATACCACGCTCAGCCTC
ATCTGCACGTGTATCTGTCATTCTGACATCACCTGCAACTTCCTG