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Detailed information on CNT30510308


BLAST search results

BLAST vs Swiss-Prot:
sp|P36181|HSP80_SOLLC, E-value = 3e-38

BLAST vs NONCODE:
NONSLYT002404, E-value = 2e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Solanum lycopersicumOryza sativa20.937.8590.7454forward
CNT30675663Solanum lycopersicumSetaria viridis46.926.0285.95121forward
CNT30282434Solanum lycopersicumChenopodium quinoa52.335.588.89135forward
CNT30402836Solanum lycopersicumBeta vulgaris66.2817.788.3171forward
CNT30712266Solanum lycopersicumGlycine max38.3736.1387.8899forward
CNT30635894Solanum lycopersicumCapsicum annuum68.9931.6296.63178forward
CNT30187559Solanum lycopersicumSecale cereale85.6633.1384.62221forward
CNT30224612Solanum lycopersicumHordeum vulgare39.5317.9687.25102forward
CNT30554828Solanum lycopersicumOryza glaberrima26.3613.0386.7668forward
CNT30441217Solanum lycopersicumAegilops tauschii65.1222.6186.31168forward
CNT30250974Solanum lycopersicumAvena sativa45.7427.4488.98118forward
CNT304322Solanum lycopersicumZea mays48.4521.8988.8125forward
CNT30227528Solanum lycopersicumAnanas comosus63.5722.5689.63164forward
CNT30126131Solanum lycopersicumCorymbia citriodora22.8710.3188.1459forward
CNT30352420Solanum lycopersicumEragrostis tef66.2827.6384.8171forward
CNT3055965Solanum lycopersicumAmborella trichopoda37.9811.2883.6798forward
CNT30107297Solanum lycopersicumOryza longistaminata49.6128.5187.5128forward
CNT30149846Solanum lycopersicumBrachypodium distachyon57.7533.6387.25149forward
CNT30103353Solanum lycopersicumOryza rufipogon65.1216.7388.1168forward
CNT30577638Solanum lycopersicumOryza barthii68.2227.1689.2176forward

Expression of CNT30510308

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MMEFSGLISMVFLLDMYPAMLESLSACAFIILSMLAVQ

Sequence

>CNT30510308
CTCAAACCGAGTTTCAACATCCTGTGAATTCTGTTGCCAAAGGTGTTTGGCTCCTCGAGGCTGAAACCTGAGGTGAGAAGGAACCAAGTCCTTCACAGAC
TTGTCATTCTTGTCTGCATCAGCCCTCTTCCTTAGCTCATCCATGATGGAGTTCTCTGGGTTGATCTCCATGGTCTTCTTGCTAGACATGTATCCAGCCA
TGCTGGAGTCCCTAAGTGCCTGTGCCTTCATAATTCTCTCCATGTTAGCAGTCCAGCC