Detailed information on CNT3051018


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30146734Cucumis sativusMedicago truncatula26.0211.3388.5770forward
CNT3022241Cucumis sativusPopulus trichocarpa21.936.0688.1459forward

Expression of CNT3051018

Peptides detected in this lncRNA

>peptide 1 (70 aa)
AGLTWPPEMLAPTETATKRAKAWLIKGYAGTLASKNKNQGGDKLSQSSLQSIWMSSLFGPSNCNVTDRHG*

Sequence

>CNT3051018
AGCGGGGTTAACATGGCCACCGGAGATGTTAGCGCCAACGGAGACGGCAACGAAAAGAGCAAAGGCATGGCTTATTAAAGGCTATGCCGGAACCTTGGCC
AGCAAAAACAAAAATCAAGGTGGAGATAAACTCAGCCAATCCAGCCTTCAAAGCATCTGGATGAGTAGCCTCTTCGGGCCTTCCAATTGCAATGTTACGG
ATCGGCATGGCTAGTAATAATTAGAGAACTTTAAAATGAAAATTCTTTAGAATTAATTGTAGTTTGTAG