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Detailed information on CNT30510004


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT002391, E-value = 3e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675958Solanum lycopersicumSetaria viridis15.4120.5293.6247reverse complement
CNT30315505Solanum lycopersicumCorylus avellana26.8917.9485.3782forward
CNT30518188Solanum lycopersicumJuglans regia26.899.3186.5982forward
CNT30702570Solanum lycopersicumQuercus lobata26.8916.484.1582forward
CNT30618876Solanum lycopersicumSesamum indicum26.895.0484.1582forward
CNT3072234Solanum lycopersicumQuercus suber25.912.5487.3479forward
CNT30379530Solanum lycopersicumManihot esculenta25.913.8886.0879forward
CNT30526697Solanum lycopersicumPhaseolus vulgaris26.8931.1887.882forward
CNT30632073Solanum lycopersicumVigna unguiculata26.8910.990.2482forward
CNT30194853Solanum lycopersicumPisum sativum28.8511.7387.588forward
CNT3094085Solanum lycopersicumSolanum tuberosum47.2128.5192.36144forward
CNT30284042Solanum lycopersicumTriticum aestivum14.4321.3693.1844forward
CNT30586986Solanum lycopersicumMusa acuminata22.319.2188.2468forward
CNT3086649Solanum lycopersicumVigna radiata28.8511.886.3688forward
CNT30171046Solanum lycopersicumTrifolium pratense28.8524.7987.588forward
CNT30597299Solanum lycopersicumFraxinus excelsior29.5116.3987.7890forward
CNT3013020Solanum lycopersicumZea mays15.4121.3693.6247forward
CNT30610418Solanum lycopersicumGossypium raimondii28.859.1587.588forward
CNT30231835Solanum lycopersicumAnanas comosus20.669.6988.8963forward
CNT30205622Solanum lycopersicumHelianthus annuus25.929.2684.8179forward
CNT30129800Solanum lycopersicumCorymbia citriodora26.8910.1984.1582forward
CNT30619778Solanum lycopersicumCajanus cajan27.8712.8487.0685forward
CNT30355146Solanum lycopersicumLactuca sativa40.3346.0784.55123forward
CNT30429187Solanum lycopersicumPapaver somniferum29.848.7387.9191forward
CNT30570929Solanum lycopersicumVitis vinifera29.5113.4187.7890forward
CNT3024639Solanum lycopersicumPopulus trichocarpa26.2319.4286.2580forward
CNT30174435Solanum lycopersicumVigna angularis26.8912.2487.882forward

Expression of CNT30510004

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MLFFAFFFFLSTAASLGSFFPAFGFFSAGTSSAFFSSTGFFSAGFFPAFGAIAQNWMMN*

>peptide 2 (46 aa)
VHYTHRLAGNTNIGMNLLKHLEDVDLVGFNALLCLLLLLVDGGILR*

Sequence

>CNT30510004
TGTTCATTATACCCATAGACTTGCTGGAAATACCAATATCGGGATGAACCTGCTTAAGCACCTTGAAGATGTAGATCTTGTAGGTTTCAATGCTCTTCTT
TGCCTTCTTCTTCTTCTTGTCGACGGCGGCATCCTTAGGTAGCTTCTTTCCGGCCTTTGGCTTTTTCTCAGCAGGAACTTCTTCAGCCTTCTTCTCCTCA
ACTGGTTTCTTCTCAGCTGGCTTCTTTCCTGCCTTTGGTGCCATTGCTCAGAATTGGATGATGAATTGAATTTGCTTTAGGTTTAGTTAAGAAAATGTGT
GAGTG