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Detailed information on CNT30509971


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30245388Solanum lycopersicumAvena sativa7.1325.7297.7589reverse complement
CNT3067934Solanum lycopersicumLeersia perrieri10.8959.6599.26136reverse complement
CNT30682403Solanum lycopersicumTriticum urartu6.6531.5698.883reverse complement
CNT30644906Solanum lycopersicumCannabis sativa7.6129.6986.3295reverse complement
CNT3099864Solanum lycopersicumOryza rufipogon6.8136.898.8285reverse complement

Expression of CNT30509971

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLEELDHLFMRTYASLNPTSPPNNAGEAQTIRRFQQ*

>peptide 2 (31 aa)
LCSLKIYSKTNTICIRIYFINQQFWATISSP*

>peptide 3 (43 aa)
MNPFFQQPSPHTPFPISSESEPNILQTGSENRHRSIRFLHARV*

Sequence

>CNT30509971
CTGTGTAGTCTAAAAATTTATTCAAAAACGAATACAATTTGCATACGCATATATTTTATCAACCAACAATTTTGGGCTACAATATCAAGTCCATAACTTA
GGCCCATTTTTAATAATTCCCCATATATAATATATTTGGTTCATTAGGTTAAGCGTTCGATATAATTGAGGGGACAATTTTTTAGATTTTTAAGTCATAA
GATTTATCTTTAGTGCTTCATAATTTTTTGGCCATCACCCTCGCTGGAGCATTTTTCGGCGAAGCTAATACCCCATTTCATTTTTTCAATTTTCTGGTGA
GACTACTATTTTTTCCAACAACAGCCATGAATTTGGGCAACCAAAAGCTCCTCCCCTTTTCTTCTCCAACCAGACCTTAACCCACCAGAAACTCCGACGA
AGACACCACCACAAGCCACCAGCTCACACCATCATTGCCTTCCCGTTTTCTCCATTTTTTCAAACCCCAAAACCAAGCCAGAAATGAACCCATTTTTCCA
GCAACCATCACCCCACACCCCATTTCCAATCAGCTCCGAATCGGAACCAAACATCCTCCAAACCGGATCCGAAAATCGTCACCGCTCCATTCGTTTTCTC
CATGCTCGAGTTTAGCCATTAATGGCTAACCTGAGTTCAACAGCTTCACCCACCGAAGAACAACAAATCAACAAAAAACAAAACCCAACACACCAGACAA
CTTGATGCTCGAGGAACTAGACCATTTATTTATGCGAACCTACGCCAGCTTAAATCCAACATCTCCACCAAACAATGCCGGCGAAGCTCAAACCATCAGG
CGTTTTCAACAATAGCAATAACCCGAAATCACCAGCTTGACTCCAACTTAGTTCCGCTTGTTCCCGGCTATTGCATCTTCCCTGCCACACTGCTTCAACA
ACAGCTTCTTAGCGACCTACTGCCCTACCACCAAGACCGGCAAGAGCACCGGATGATTGAACACTATCCCGACCACTCTTTCGTCTAAGGATGCCTAACC
GCCGCACCGATCATTCGGGGGGAGGCGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGC
TCAAGCTAAGATTCATTACTAACATTTTTTACTAAACGTTTTTACAGATACCCCGAGGTGCTCCTCATTGAAGCTATTCAAATTAGGTTAGAGTATTACT
CGTATTCCTTATTGTATATTATTGACGATAGACAAATTTAGATCGATTT