« Back to Solanum lycopersicum search


Detailed information on CNT30509966


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553142Solanum lycopersicumOryza glaberrima9.2230.4586.3688forward
CNT30595937Solanum lycopersicumOryza meridionalis9.222186.3688forward

Expression of CNT30509966

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MVTWANQQQNKRIRSNLELVSTSIDYPIPSMVLTMIRRHCSTSTNRGQSFLLISPMMVVVEKSQCCSLVYYFLF*

>peptide 2 (51 aa)
TQKLYQDQRCMKLPYHSSPNPLHLYQDLTKVNRKANQCPGWQLDVDMMLNT*

>peptide 3 (61 aa)
NSETLSGPKVYETPLSFIPQPFTSLPGSDQSKSQSKPVSGMAVGRGHDVEHMNDMKLKRIK*

>peptide 4 (51 aa)
MPLVIFHKVSFELYLRAREQKNQSMCPFNIVRNYGWCTHQLKIVAKDGYMG*

Sequence

>CNT30509966
AAACTCAGAAACTTTATCAGGACCAAAGGTGTATGAAACTCCCCTATCATTCATCCCCCAACCCTTTACATCTTTACCAGGATCTGACCAAAGTAAATCG
CAAAGCAAACCAGTGTCCGGGATGGCAGTTGGACGTGGACATGATGTTGAACACATGAATGATATGAAGCTAAAAAGGATCAAATAAGGCTTTGAAGTAT
GAACGAAGTCAAAGAAAACTAATCGGGATCATGTCCAGGACAGAGAGTGTGCACATCAGCCGACTAAAGACATTTTGACACTATTGTATGCCCACCCGGT
GCATGGAAAGTTGAGCCTTGCGATGTGGAGCTCAACCTTGGGGAAAAAGGTGGTAGGCTGATGTTGAAAGTTATACTGCTTCGGGCTACCTTTTCTCGAG
TTATGGGTCTATCGAAGTCAACCCCTCTATCTTAAGATAGTGCAAAGGAACAGGACTAACTAGAGTGTCACAGTAGGTTTCCAGTTTACCAAATTTTGGT
GCTAACAATCAATGCCTTTGGTGATTTTTCACAAGGTATCATTTGAACTGTACTTAAGAGCTAGAGAGCAGAAGAACCAATCAATGTGCCCATTCAATAT
TGTGAGAAACTATGGATGGTGCACACACCAACTAAAAATTGTTGCAAAAGATGGTTACATGGGCTAACCAGCAGCAAAACAAAAGAATCCGATCCAATCT
AGAGTTGGTATCTACCTCCATTGATTATCCAATACCATCCATGGTGTTAACAATGATCAGACGGCATTGCTCAACATCAACTAACAGAGGCCAAAGCTTT
TTATTGATATCCCCAATGATGGTGGTGGTAGAGAAAAGTCAGTGTTGCTCATTGGTATACTACTTCCTATTCTAGTATAAATATCACTCATTAGTTTCTT
GGGTTGAACATGACTATTTTATTTATTGATAATGCAAAACGTAGTGAGACCTAT