« Back to Cucumis sativus search


Detailed information on CNT3050992


BLAST search results

BLAST vs Swiss-Prot:
sp|P69317|UBIQ_LUPPO, E-value = 3e-48

BLAST vs NONCODE:
NONSTUT000620, E-value = 2e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30725948Cucumis sativusLupinus angustifolius35.2427.8486.4228forward

Expression of CNT3050992

Peptides detected in this lncRNA

>peptide 1 (56 aa)
HIHIKKNTNISGNQFYSTAIIGRLQASCFQVPNLQHINIQKSFKDNHQHPTTSTTI*

>peptide 2 (37 aa)
THSHKEKHKHFGKSILFNSNNRPPTGQLFPSTKSSTH*

Sequence

>CNT3050992
TACACATTCACATAAAGAAAAACACAAACATTTCGGGAAATCAATTTTATTCAACAGCAATAATAGGCCGCCTACAGGCCAGCTGTTTCCAAGTACCAAA
TCTTCAACACATTAACATTCAGAAATCATTCAAAGACAATCACCAACACCCAACAACATCCACCACCATCTAAAAACCACCACGGAGACGCAGGACAAGG
TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGGGGAATTC
CTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTACCGGTTAGGGTTTTAACGAAGATTTG
CATCTGCCAGATAAGAAAAAGAAAATAAACAAACAAATAAGAACCCCTTTCTCCAAAATCACAACAACCTGTAAATCACGCGATGATAAGAAATAAAACC
TAAATCGAAACCCTAAAACATCTCAATTCAACAAATATCACAATACCATATAACACAAAAATAAACGAATCAAATTAGATGAACAAAAACCCAAAGAAAT
GAAAAAGAAAGAAGGCAAAAGAAAGAAAAAAGAAAGAGGAGGCCGAA