Detailed information on CNT30509501


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SUL1|RD19C_ARATH, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691218Solanum lycopersicumOryza sativa26.2913.7182.35102forward
CNT30630515Solanum lycopersicumVigna unguiculata16.2421.585.7163forward
CNT3092736Solanum lycopersicumSolanum tuberosum61.638.6794.98239forward
CNT30143899Solanum lycopersicumMedicago truncatula18.8136.1486.373forward
CNT30218447Solanum lycopersicumKalanchoe fedtschenkoi19.8525.1684.4277forward
CNT30116007Solanum lycopersicumOryza nivara26.2915.0482.35102forward

Expression of CNT30509501

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PIICSIKLQIQIPVHGLRHDNKVLMKSKT*

>peptide 2 (41 aa)
MAPADLVISVFSPSLSPRILDDPVRLILETYRCKTFRSITD*

>peptide 3 (52 aa)
MAVKSLITDNILGIYFILKIRISSMCGSHSRDHGPCRSCNIRVLPKSFPKNS*

Sequence

>CNT30509501
CTCCAATTATTTGCAGTATAAAACTACAGATACAAATCCCAGTACATGGTTTGAGGCACGATAATAAGGTGCTGATGAAATCCAAGACATGAGTTCACAA
TACATTACTGACCAATATATTTACAAAGATTAGGGTAATGGCAGTAAAATCGCTGATTACAGACAACATTCTTGGGATATATTTCATCTTAAAGATTAGG
ATTAGTAGTATGTGTGGCAGTCACAGTAGAGACCATGGCCCCTGCAGATCTTGTAATATCCGTGTTCTCCCCAAGTCTTTCCCCAAGAATTCTTGATGAT
CCAGTAAGGCTTATTCTTGAGACGTATAGGTGCAAAACCTTCAGATCCATAACCGACTAGGAGGACACCATGATCCTGACGCTTGAAG