Detailed information on CNT30509419


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 1e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549214Solanum lycopersicumIpomoea triloba12.1122.2179.87149forward
CNT30487670Solanum lycopersicumOlea europaea12.627.3981.94155forward
CNT30507211Solanum lycopersicumNicotiana attenuata8.7827.9185.19108forward

Expression of CNT30509419

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MFSSTILHLENINIITTLSPYQLSFLPLNKFTLLQYKIWAQAQSKPNK*

>peptide 2 (51 aa)
MISRDPLLHFEMLLTAFSMDSCDGDFNVVTVPSMAGACSIGSQVHLTDGPI*

>peptide 3 (53 aa)
MIESVPPLMIDPVRIYALSRNGGEGDGEIEDEEKEPETIEVSSNSHGHCLFLS*

>peptide 4 (34 aa)
MFSNYRCFCTCVKLLYVSLLFIEYNVLKKINTNF*

>peptide 5 (41 aa)
MEELVTKYIFFFHTKRKFKEKLRKLVTLFFLLRVFFSYFIFT

Sequence

>CNT30509419
CTCAGCTATTGATAATATATATTGGACCTTATTATTCATTAGATAATCAATGTTTTCATCAACCATACTACATCTCGAAAACATAAACATCATAACAACC
CTGAGCCCTTACCAATTGTCTTTTCTGCCCCTTAATAAATTCACACTACTCCAATATAAAATATGGGCTCAGGCCCAATCAAAGCCCAATAAATGACTAA
TAGATCACATCACAGCAGCATCGAAAACAACCAGATTCTCACCGGAAACAGGTAAATTCTCAACGGAAGCAGGCAGATCCTCAGCAGAGACGGACAAATA
TTCCCCGGACTTCGTCTTTCTACACAGATTTTTGATGAAAGTGAGCTGATAAGGAGAATGATCAGTCGCGATCCACTGCTCCACTTCGAAATGCTGTTGA
CGGCATTCTCTATGGACTCCTGTGACGGTGACTTCAACGTAGTTACAGTACCATCCATGGCCGGAGCCTGTTCCATCGGAAGTCAAGTTCATCTTACAGA
TGGGCCCATTTAAACATGGGCCTCGGCCACTGAAAATGTCCAAGTTTCCTCTCTCGAAATAGTTGTAACCCGGGCCCATAAGTCCGCCCCAAGCTTCCAA
GTTTTTTATTCGAATACCGTACCCGTTTTCATCAAAGAGAGTTAAACTGATGATCGAATCGGTTCCACCTTTGATGATTGATCCAGTTCGGATATATGCA
CTATCCAGAAATGGAGGAGAGGGAGATGGAGAAATAGAGGACGAAGAGAAGGAACCAGAAACGATTGAAGTGAGCAGCAACTCCCATGGCCATTGTTTGT
TTCTCTCTTAGTGTAATGTAATACTCGATCTATATCAATGTTTGTGGGGGCCGGCCATATTATATATAGGGTGTGAATACTATCTTTTCCTTTTTCATAT
CTTTAGTAACTAATTTAATGTTTTCCTTTTTCACATGTTTAGTAACTATAGGTGTTTTTGTACGTGTGTTAAATTATTGTATGTAAGTTTATTATTTATT
GAGTATAATGTTTTGAAAAAAATTAATACAAATTTTTAAGATAATACTTACATACAACAATGGTTTTGGCTCCGTGGTGGTTGAGATAAAGGTTAGATAT
CAAAATGGAAGAATTAGTCACGAAATACATTTTTTTTTTTCATACAAAGAGAAAGTTCAAAGAAAAGCTACGAAAACTCGTCACTCTTTTTTTTCTTCTT
CGTGTTTTCTTTTCCTATTTTATATTTACT