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Detailed information on CNT30509389


BLAST search results

BLAST vs Swiss-Prot:
sp|C7J4U3|OST4A_ORYSJ, E-value = 3e-15

BLAST vs NONCODE:
NONSLYT001262, E-value = 9e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282360Solanum lycopersicumChenopodium quinoa4.9731.2210064reverse complement
CNT3092634Solanum lycopersicumSolanum tuberosum15.2832.6794.42197forward
CNT30205883Solanum lycopersicumHelianthus annuus5.593210072forward

Expression of CNT30509389

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDDQDLGFFANFLGIFIFVFVIAYHYVVADPKYLGN*

>peptide 2 (44 aa)
MLISFVISKIFFSEIHKCFSEIMLVENKSEISTLTKFLWIIGRL*

>peptide 3 (39 aa)
MRSDIWSEKVRSFICSLSHFVNVMGLDRLQVASILKKMC*

Sequence

>CNT30509389
AAACTCAAATACGTAATTTTAAAATTCTACATTCGAATACCACACCAAATAATTAAATAATTTTGTTTTGTGTTGCTACAAGAACATGAAGTGGCTGTAG
TTTAGTGGTAAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAGCAGCCACACTTAATTTTTTTTTCTTTTTACTTTTTTAGTTTCAGTT
TCGTATTTTTGGTTCACTTAATAAAAGCCCAAATCTCATTTTTATTTGATTAATACTACTTTTTTCCCCTCACAGCAGGCTACTAATTTTTTTTCAACAA
ATTCGATCTCAATCAATCGAAGATAATGGATGATCAAGATTTAGGATTCTTTGCTAACTTTCTTGGCATCTTTATTTTCGTATTTGTTATTGCTTATCAT
TATGTAGTGGCTGATCCCAAGTACTTGGGCAACTAACTGATATAGATGATCCCATAGTAAGTAGTAACTTTTAATGAGCTCAAGATGAATTTCATTTTTA
TCTTTTATTATCACCAGTTAGTTCTTACCTGAATATTATGAGATCGGACATTTGGTCTGAGAAAGTCAGAAGTTTTATTTGTTCTCTCTCTCATTTTGTG
AACGTGATGGGTCTTGATCGATTGCAAGTTGCAAGTATTCTTAAGAAAATGTGCTGAATAGTCGGGTTAGACCTATCAGAAAAACAACCTCTCTATTTTT
TTACGTAGAGGTAAAGCTGCAGACACTTCATCCTTTCCGAACCCACTTGCAGAGTATTACTGGGTATGTTTGTTGTTGGGTCTGCACCTAGAGGTTCAGT
GATAAGCTCTCTTTGGCTTAGCTACTTTGTTTGGTAAACAACACAAATGATTATAAGCTTTAACCAGTCTTCTTTAAATTGCTAAATGCTAATATCTTTT
GTAATCTCTAAAATATTCTTTTCTGAAATACACAAATGTTTCTCAGAAATAATGTTGGTTGAAAATAAAAGTGAAATTTCAACGCTTACAAAATTTCTAT
GGATAATTGGTCGTCTTTGACGACTTAAATTCTCATTCTTCATGACTTGCTAAAACAGCTAGTCAAATATTGAATTATTGTCAATCTTCCAGAACTCATA
CGGTCATCCATGAACCAAAAATGATTTAAAAGTATATATATATACACACATTATTATTCCAGATATTCCTAACTTTTAAAATAATCATGGTGATGTCCAA
TGCATTACTTTTTTTTAATAAAAGGTCTCGATATTGATATTTAGACATAGAAAAAATCTTGAGGAAAGGATCAAAATAATCCTTTTTTA