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Detailed information on CNT30509382


BLAST search results

BLAST vs Swiss-Prot:
sp|P09043|G3PA_TOBAC, E-value = 5e-43

BLAST vs NONCODE:
NONATHT000140, E-value = 8e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676092Solanum lycopersicumSetaria viridis15.3433.1184.6998forward
CNT30524082Solanum lycopersicumSetaria italica27.5418.0380.68176forward
CNT30698911Solanum lycopersicumQuercus lobata14.7134.9493.6294forward
CNT30371585Solanum lycopersicumArabidopsis thaliana20.9734.2788.81134forward
CNT30268339Solanum lycopersicumChenopodium quinoa41.3132.4385.23264forward
CNT30729008Solanum lycopersicumCorchorus capsularis41.1649.3484.41263forward
CNT30381182Solanum lycopersicumManihot esculenta16.7426.9587.85107forward
CNT30524716Solanum lycopersicumPhaseolus vulgaris41.3133.7282.95264forward
CNT30628637Solanum lycopersicumVigna unguiculata66.9849.9478.04428forward
CNT30196808Solanum lycopersicumPisum sativum10.6428.6994.1268forward
CNT30490066Solanum lycopersicumOlea europaea20.8114.9180.45133forward
CNT30712586Solanum lycopersicumGlycine max38.3436.384.9245forward
CNT30123402Solanum lycopersicumPhyscomitrium patens20.0315.9282.03128forward
CNT3088037Solanum lycopersicumVigna radiata25.211.9882.61161forward
CNT30541340Solanum lycopersicumBrassica napus30.6730.6387.24196forward
CNT30146657Solanum lycopersicumMedicago truncatula40.6923.783.46260forward
CNT30243463Solanum lycopersicumAvena sativa18.4722.5684.75118forward
CNT30310642Solanum lycopersicumCamelina sativa42.5741.6582.72272forward
CNT30598889Solanum lycopersicumFraxinus excelsior8.1422.3292.3152forward
CNT302683Solanum lycopersicumZea mays14.8723.5183.1695forward
CNT30648504Solanum lycopersicumRosa chinensis28.482585.16182forward
CNT30622203Solanum lycopersicumCajanus cajan4130.4382.82262forward
CNT30356803Solanum lycopersicumLactuca sativa28.9527.6184.32185forward
CNT30572796Solanum lycopersicumVitis vinifera73.5589.0282.34470forward
CNT30119544Solanum lycopersicumCitrus clementina29.4216.3583.51188forward
CNT30585204Solanum lycopersicumEchinochloa crusgalli17.6822.3384.07113forward
CNT30726265Solanum lycopersicumLupinus angustifolius73.0870.0179.66467forward

Expression of CNT30509382

Peptides detected in this lncRNA

>peptide 1 (32 aa)
KGTFIELRFHKVENCYSSHYNFQKGIRIYKQG*

>peptide 2 (38 aa)
MSPFPGAVMSTFLAPAWMCLPAPSLSTKTPVPSMTKSTP

>peptide 3 (79 aa)
MSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRQLVVQEALLMIGSSWL*

>peptide 4 (49 aa)
MAVKFSIDTNNISRDVTFSGGGDEHLLGSGLDVFTGTFSVYKNSGTFYD*

Sequence

>CNT30509382
GAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTA
AAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCC
TCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTC
ACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCC
TCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGCAGTTGGTGGTACAAGAGGCATTGCTGATGATAGGTTCATCATGGCTGTAAAGTTCAGCATTGA
CACCAACAACATAAGTAGGGATGTCACCTTTTCCGGGGGCGGTGATGAGCACCTTCTTGGCTCCGGCCTGGATGTGTTTACCGGCACCTTCTCTGTCTAC
AAAAACTCCGGTACCTTCTATGACTAAGTCAACTCCAAG