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Detailed information on CNT3050899

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675350	Cucumis sativus	Setaria viridis	59.52	72.12	84.67	150	forward
CNT30532843	Cucumis sativus	Eucalyptus grandis	32.14	11.07	87.65	81	forward
CNT30316236	Cucumis sativus	Corylus avellana	68.65	37.69	82.66	173	forward
CNT30547527	Cucumis sativus	Ipomoea triloba	48.81	28.41	82.93	123	forward
CNT30512951	Cucumis sativus	Juglans regia	67.46	21.79	82.94	170	forward
CNT30276060	Cucumis sativus	Chenopodium quinoa	24.6	9.78	91.94	62	forward
CNT3019597	Cucumis sativus	Citrullus lanatus	68.65	23.13	89.6	173	forward
CNT30728649	Cucumis sativus	Corchorus capsularis	61.9	14.33	83.97	156	forward
CNT30405829	Cucumis sativus	Beta vulgaris	48.41	14.77	86.07	122	forward
CNT30711584	Cucumis sativus	Glycine max	53.17	19.03	85.82	134	forward
CNT3045373	Cucumis sativus	Prunus dulcis	68.65	22.07	83.24	173	forward
CNT30300473	Cucumis sativus	Triticum aestivum	59.13	15.39	81.21	149	forward
CNT30561658	Cucumis sativus	Actinidia chinensis	66.27	14.27	86.23	167	forward
CNT3085191	Cucumis sativus	Vigna radiata	62.7	22.04	86.08	158	forward
CNT30510505	Cucumis sativus	Solanum lycopersicum	62.7	14.55	84.18	158	forward
CNT30552635	Cucumis sativus	Oryza glaberrima	52.38	12.72	82.58	132	forward
CNT30143941	Cucumis sativus	Medicago truncatula	56.75	31.92	83.22	143	forward
CNT30440797	Cucumis sativus	Aegilops tauschii	50.79	17.58	82.81	128	forward
CNT30313706	Cucumis sativus	Camelina sativa	63.1	48.77	81.76	159	forward
CNT3059659	Cucumis sativus	Arabidopsis lyrata	64.29	37.33	82.72	162	forward
CNT30135610	Cucumis sativus	Lolium perenne	21.43	6.38	90.74	54	forward
CNT3015270	Cucumis sativus	Zea mays	58.33	32.45	82.31	147	forward
CNT30203835	Cucumis sativus	Helianthus annuus	63.1	33.12	81.13	159	forward
CNT30722731	Cucumis sativus	Triticum spelta	43.65	21.53	83.64	110	forward
CNT30345702	Cucumis sativus	Eragrostis tef	63.89	19.93	86.96	161	forward
CNT30361520	Cucumis sativus	Sorghum bicolor	63.1	23.25	83.02	159	forward
CNT30596064	Cucumis sativus	Oryza meridionalis	52.38	25.78	82.58	132	forward
CNT30369654	Cucumis sativus	Oryza glumipatula	22.62	6.48	89.47	57	forward
CNT30154011	Cucumis sativus	Prunus persica	35.32	31.67	91.01	89	forward
CNT30107537	Cucumis sativus	Oryza longistaminata	52.38	14.36	82.58	132	forward
CNT30100260	Cucumis sativus	Oryza rufipogon	58.33	20.47	83.67	147	forward
CNT30575129	Cucumis sativus	Oryza barthii	52.38	16.22	81.82	132	forward
CNT30116094	Cucumis sativus	Oryza nivara	52.38	15	82.58	132	forward

Expression of CNT3050899

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MMIILKINNMFRTFDPLSNGSEDIISQWSNTHCGNAWPEVAALKVLENPNDSITGRYALML*

>peptide 2 (40 aa)
MDLKTSFPNGQTHTVGMPGQKLQLSKCSRTQMIQLRGDMP*

Sequence

>CNT3050899
CTAATTTCAATATGATTAATTAAAGATGATGATAATTTTGAAGATCAATAACATGTTCAGAACATTTGACCCACTTTCTAATGGATCTGAAGACATCATT
TCCCAATGGTCAAACACACACTGTGGGAATGCCTGGCCAGAAGTTGCAGCTCTCAAAGTGCTCGAGAACCCAAATGATTCAATTACGGGGAGATATGCCT
TGATGTTGTAAAGAGGTGTGCCAGGCCTCTGCATTTCCTCAAAGACGTGCCC