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Detailed information on CNT30508850


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372926Solanum lycopersicumArabidopsis thaliana14.7625.2683.5197reverse complement
CNT30164954Solanum lycopersicumPistacia vera14.1630.3982.893forward

Expression of CNT30508850

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIFIVIVRTINHKFKLNFLIVVSNASKLALLICEVLLSLSF

>peptide 2 (82 aa)
LKGGTIKQIHHLFFIFHIFFLFKRRKMNWVQRKIYLYNVTFGLYMLDWWERCLFSILFCFSCSSILLDLLLVYRFSIYSADL*

>peptide 3 (29 aa)
MSLLVCTCSTGGNVVSSVSFFVSHVLQFC*

Sequence

>CNT30508850
TTTAAAAGGCGGCACGATCAAGCAAATTCATCATTTGTTCTTCATATTTCACATTTTTTTTCTGTTTAAACGGAGAAAAATGAATTGGGTTCAACGGAAA
ATTTATCTCTACAATGTCACTTTTGGTTTGTACATGCTCGACTGGTGGGAACGTTGTCTCTTCAGTATCCTTTTTTGTTTCTCATGTTCTTCAATTTTGT
TAGATCTCCTTTTAGTTTATCGATTTTCAATTTATTCTGCTGATCTGTGATTTATCTATCAGATTTTTATTGGATCTGGAGTTCTTAACGCTTTTTAGAT
ATTTTGGTGCTTGTGTTGCTATGGTTTATGTGTTACAACGGGTTTCGATTTGCTTCTGAGCTCTTCAATAGGCAAATGTGGTGAAAGTTCATCATCTGTG
TCCTATATGCATGTTTTGGCATTTAACTTTTAAAGTTGTGAAATTGTTTGCTGTGCCATGGATATAGTTGGCTTTGTATGAATTCATATTACTAGAAAAA
TACGTCGTTCTTTTCTTATTCTTTACCAATAGATGATATTTATTGTAATAGTTCGAACAATCAATCATAAATTCAAGTTGAATTTCTTGATTGTTGTAAG
CAATGCTTCGAAATTAGCTTTATTAATTTGTGAAGTTCTTCTTTCCCTCTCTTTTGG