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Detailed information on CNT30508846


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 3e-43

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512567Solanum lycopersicumJuglans regia18.9121.5386.6790forward
CNT30616510Solanum lycopersicumSesamum indicum20.597.182.6598forward
CNT30279728Solanum lycopersicumChenopodium quinoa46.8530.0982.96223forward
CNT30402284Solanum lycopersicumBeta vulgaris19.5442.4786.0293forward
CNT30525466Solanum lycopersicumPhaseolus vulgaris13.2421.2192.0663forward
CNT30629523Solanum lycopersicumVigna unguiculata38.8723.4584.86185forward
CNT30508072Solanum lycopersicumNicotiana attenuata38.4521.487.98183forward
CNT30712618Solanum lycopersicumGlycine max43.2835.2783.5206forward
CNT30633374Solanum lycopersicumCapsicum annuum5027.7486.13238forward
CNT30620550Solanum lycopersicumCajanus cajan39.0815.5381.18186forward
CNT30355748Solanum lycopersicumLactuca sativa39.7138.4180.95189forward
CNT30176139Solanum lycopersicumVigna angularis41.8114.8182.41199forward
CNT30335392Solanum lycopersicumCynara cardunculus38.2422.3382.42182forward
CNT3039544Solanum lycopersicumMarchantia polymorpha12.3922.1889.8359forward

Expression of CNT30508846

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIKHITTDSSLLISHNLVGIEENTPVQIKQTF*

>peptide 2 (56 aa)
MFGNLESFWLVGNEADALDLTNVVESDNTNPGLWVRLLRLLNLSQHLCCISAPKHR*

Sequence

>CNT30508846
TTTAAAGTGAGATTTTTATTTTGGATAATAAAACTCATTCACACCACACAAATTTTTTAAAAAAAGAACACATGATTAAACATATAACCACCGATTCATC
ATTATTAATTTCTCATAACTTGGTCGGAATCGAAGAAAATACACCGGTACAAATCAAACAAACATTTTGATTATATGTTTGGAAATTTAGAATCCTTCTG
GCTTGTAGGCAATGAAGCTGATGCACTGGACTTGACGAACGTTGTCGAATCCGATAATACGAACCCAGGCTTGTGGGTACGCCTTCTTCGCCTCTTGAAC
CTCAGCCAACACCTGTGTTGCATCAGTGCACCCAAACATAGGTAACTTCCACATGGTCCAGTATCTACCATCGTAGTATCCAGGGGAACTGTTGTTCTCT
CGGTACACAAATCCGCGCTGTTACATACATATATTACAAACAAACGACAGTTCAAATTATTTTTATAACTTCAAAT