Detailed information on CNT30508717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517998Solanum lycopersicumJuglans regia37.856.4683.9581forward
CNT30540682Solanum lycopersicumBrassica napus44.8614.3782.2996forward
CNT30236524Solanum lycopersicumBrassica oleracea44.8614.8183.3396forward
CNT30309702Solanum lycopersicumCamelina sativa44.869.8682.2996forward
CNT3081485Solanum lycopersicumBrassica juncea44.8610.8483.3396forward
CNT30264014Solanum lycopersicumBrassica rapa44.8613.0482.2996forward
CNT30611294Solanum lycopersicumArabis alpina44.865.8284.3896forward
CNT30360842Solanum lycopersicumLactuca sativa33.1810.7385.9271forward
CNT30643841Solanum lycopersicumCannabis sativa41.5912.1386.5289forward
CNT30111654Solanum lycopersicumFicus carica45.3314.783.5197forward

Expression of CNT30508717

Peptides detected in this lncRNA

>peptide 1 (70 aa)
FKRRKMNWVQRKIYLYNVTFGLYMLDWWERCLFNILVLVLLWFMCYNGFRFASELFNSELIEFNNQWRMLA

>peptide 2 (43 aa)
MSLLVCTCSTGGNVVSSIFWCLCCYGLCVTTGFDLLLSSSIAN*

Sequence

>CNT30508717
GTTTAAACGGAGAAAAATGAATTGGGTTCAACGGAAAATTTATCTCTACAATGTCACTTTTGGTTTGTACATGCTCGACTGGTGGGAACGTTGTCTCTTC
AATATTTTGGTGCTTGTGTTGCTATGGTTTATGTGTTACAACGGGTTTCGATTTGCTTCTGAGCTCTTCAATAGCGAATTAATAGAATTTAATAACCAAT
GGCGGATGCTAGCA