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Detailed information on CNT30508697


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONSTUT001352, E-value = 5e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500907Solanum lycopersicumCoffea canephora72.5771.7986.61672forward
CNT30525395Solanum lycopersicumPhaseolus vulgaris70.5264.0883.15653forward
CNT30709059Solanum lycopersicumGlycine max46.7680.1986.37433forward

Expression of CNT30508697

Peptides detected in this lncRNA

>peptide 1 (38 aa)
EKSIILSSKLTITTLQGHQFMIFIFQEQSLWQRPRHCY*

>peptide 2 (67 aa)
MPRGLQQGLMGRSCHRGRVGRQPHQEVHQQYGNLQRLPSRQLGKPRWLRCSVHGPSLGCPSSQVLPR*

>peptide 3 (47 aa)
MVILPFPEISEAEGESFTACPAKEGEERAIVAAAMVFKERKMRELLV*

>peptide 4 (36 aa)
MDQAWVAQVVKSSLAEDLGSGLEPHSLTELDTVTGQ*

Sequence

>CNT30508697
GAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGC
CCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAG
AACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGT
AGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCT
CTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACA
CCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTT
CAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTT
AACACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAG
GGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTTAAAGAGAGGAAAATGAGGGAGTTGCTAG
TTTGATATGTAAAAGTTAGTTGTGAT