Detailed information on CNT30508652


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501219Solanum lycopersicumCoffea canephora26.3225.2488.7580reverse complement
CNT30503735Solanum lycopersicumNicotiana attenuata98.6899.0185.33300forward
CNT3096554Solanum lycopersicumSolanum tuberosum100100.3391.78304forward
CNT30262244Solanum lycopersicumBrassica rapa27.327.3985.5483forward
CNT30647270Solanum lycopersicumRosa chinensis29.6129.3286.6790forward
CNT30644675Solanum lycopersicumCannabis sativa20.3915.6291.9462reverse complement

Expression of CNT30508652

Peptides detected in this lncRNA

>peptide 1 (51 aa)
PSLVTWACNPSGGISVVECWAVPDGWAWRANLWPALSKHRVGPCYPIEGMG*

>peptide 2 (67 aa)
MVGPGGLIYGLPCPSIELGLAIQSKEWADGFLKWNGLREAGFTEQRTVPALCSGRITSRYPPKSNNA*

Sequence

>CNT30508652
GCCGAGCTTAGTAACATGGGCTTGTAACCCAAGTGGGGGCATTAGTGTGGTGGAATGTTGGGCTGTTCCAGATGGTTGGGCCTGGCGGGCTAATTTATGG
CCTGCCCTGTCCAAGCATAGAGTTGGGCCTTGCTATCCAATCGAAGGAATGGGCTGATGGGTTCCTAAAGTGGAACGGACTGCGTGAGGCTGGTTTCACA
GAGCAACGAACAGTTCCCGCTCTATGCAGTGGAAGGATAACGAGTCGGTACCCTCCTAAGTCCAATAACGCCTGATGGGCTGCTCCAATTAAACCACCAC
TTTT