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Detailed information on CNT30508643


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71T45|H32_EUPES, E-value = 2e-69

BLAST vs NONCODE:
NONATHT004002, E-value = 3e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677790Solanum lycopersicumSetaria viridis14.326.8381.82110forward
CNT30315797Solanum lycopersicumCorylus avellana49.9358.0978.12384forward
CNT30547549Solanum lycopersicumIpomoea triloba53.5853.2383.74412forward
CNT30700039Solanum lycopersicumQuercus lobata42.1366.2682.1324forward
CNT30274756Solanum lycopersicumChenopodium quinoa53.3238.0380.49410forward
CNT3069242Solanum lycopersicumQuercus suber50.9873.1380.87392forward
CNT30380641Solanum lycopersicumManihot esculenta49.2854.8583.38379forward
CNT30200890Solanum lycopersicumPisum sativum49.9362.4480.47384forward
CNT30709007Solanum lycopersicumGlycine max22.2471.8582.46171forward
CNT3048083Solanum lycopersicumPrunus dulcis49.854.5684.07383forward
CNT3090157Solanum lycopersicumSolanum tuberosum33.6840.1695.75259forward
CNT30221452Solanum lycopersicumHordeum vulgare16.6420.9582.81128forward
CNT30565750Solanum lycopersicumActinidia chinensis47.4633.2178.9365forward
CNT3084175Solanum lycopersicumVigna radiata50.0736.9582.86385forward
CNT30538358Solanum lycopersicumBrassica napus9.4925.5284.9373reverse complement
CNT30255419Solanum lycopersicumAvena sativa17.0424.5883.97131forward
CNT30657055Solanum lycopersicumTriticum dicoccoides15.8623.3381.15122forward
CNT30309861Solanum lycopersicumCamelina sativa22.3727.7481.4172forward
CNT30259840Solanum lycopersicumBrassica rapa22.559.8682.08173forward
CNT30613891Solanum lycopersicumArabis alpina11.5722.0884.2789forward
CNT30447268Solanum lycopersicumSaccharum spontaneum16.2532.0583.2125forward
CNT30140729Solanum lycopersicumLolium perenne15.8622.5981.97122forward
CNT30609694Solanum lycopersicumGossypium raimondii53.5853.7983.01412forward
CNT30720053Solanum lycopersicumTriticum spelta15.8641.581.15122forward
CNT30477972Solanum lycopersicumArabidopsis halleri44.7399.4282.56344forward
CNT30361473Solanum lycopersicumSorghum bicolor16.2523.2384125forward
CNT30358481Solanum lycopersicumLactuca sativa53.7145.0983.29413forward
CNT30154413Solanum lycopersicumPrunus persica12.7425.3284.6998forward
CNT30414942Solanum lycopersicumPapaver somniferum50.0747.3681.56385forward
CNT30644610Solanum lycopersicumCannabis sativa45.6476.382.34351forward
CNT3053477Solanum lycopersicumAmborella trichopoda47.4658.3181.37365forward
CNT30328607Solanum lycopersicumAsparagus officinalis17.6923.7880.88136forward
CNT3051266Solanum lycopersicumCucumis sativus53.4554.879.56411forward

Expression of CNT30508643

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRTVHSTQPKGKSNKEGNVNYSNPDHRMSISFS*

>peptide 2 (57 aa)
MIYITNPNIQQKLLSPFSTKPPSKLNILGHDSYPLGMDCTEIGIFKEPNKVSLSSLL*

Sequence

>CNT30508643
ATCTTTTTGCAGTAATTGAGATCTAAATGCTTATATTTCTTTCCTCGATAGCAATCGTACAAGCTAGCAAATAATTTAACAATTGCAACTTTCTGGAGAA
GAGAAACACTTATGAGAACTGTACACTCTACACAACCAAAAGGCAAAAGCAATAAAGAAGGAAATGTAAATTACTCTAATCCAGATCATAGAATGAGCAT
CAGCTTTAGCTGAAACAAAATGAACTACAGGTTTCATTAATCAGATTCCAGAATAGTACTAAACCAAAGGTTTACACATCAAGGAATATGATTTACATAA
CCAATCCTAACATTCAACAAAAACTCCTAAGCCCTTTCTCCACGAAGCCTCCTAGCAAGCTGAATATCCTTGGGCATGATAGTTACCCTCTTGGCATGGA
TTGCACAGAGATTGGTATCTTCAAAGAGCCCAACAAGGTAAGCCTCAGCAGCCTCTTGTAGAGCAGCCACAGCACTGCTCTGAAACCTCAGATCTGTTTT
GAAATCCTGAGCGATTTCCCTCACTAGCCTCTGAAAAGGAAGCTTCCTGATCAACAACTCAGTAGACTTCTGGTACTTCCTGATTTCCCTTAAAGCTACA
GTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTCCTCCGGTAGCCGGAGCTGACTTTCTTGCGGCCTTGGTAGCTAGCTGCTTCCTTGGTGCCTTTCCAC
CAGTGGATTTGCGAGCAGTCTGCTTGGTACGGGCCATTTTGCTTTTTACTGATGAAAACTCGAGTTCTG