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Detailed information on CNT30508626


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 6e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700549Solanum lycopersicumQuercus lobata66.5756.9684.44225forward
CNT30375121Solanum lycopersicumArabidopsis thaliana22.4910.484.2176forward
CNT30615836Solanum lycopersicumSesamum indicum62.7255.3584.43212forward
CNT30503775Solanum lycopersicumNicotiana attenuata98.8275.491.92334forward
CNT3091042Solanum lycopersicumSolanum tuberosum10092.697.34338forward
CNT30457014Solanum lycopersicumSaccharum spontaneum36.9816.3684125forward
CNT30653881Solanum lycopersicumRosa chinensis22.787.2184.4277forward
CNT30477892Solanum lycopersicumArabidopsis halleri72.4922.982.04245forward
CNT30645151Solanum lycopersicumCannabis sativa72.7825.8182.52246forward
CNT30325711Solanum lycopersicumAsparagus officinalis47.9350.7887.04162forward
CNT30603529Solanum lycopersicumOryza punctata52.3723.1480.23177forward
CNT3064271Solanum lycopersicumSelaginella moellendorffii21.0112.9185.9271forward

Expression of CNT30508626

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MNRRSRARQMINMINFKQDRLHHIMPNQLKLRVIEMVQQVLFLTSKEIINHNH

>peptide 2 (48 aa)
TNGVNIAPISFNLRMLQRITIHFTCASYQKSSSYSFCQPQHVQCSHHI*

Sequence

>CNT30508626
ACCAATGGGGTTAACATTGCCCCAATAAGTTTCAACTTGAGGATGCTGCAAAGGATCACCATACACTTCACTTGTGCTAGTTATCAGAAATCTAGCTCCT
ACTCTTTTTGCCAGCCCCAACATGTTCAATGTTCCCATCACATTTGATATAATGGTCTTGACGGGATTATACTTGTAATGAACCGGAGAAGCAGGGCACG
CCAAATGATAAATATGATCAACTTCAAGCAAGATAGGCTCCACCACATCATGCCTAACCAACTCAAACTTAGGGTTATTGAGATGGTGCAACAAGTTCTG
TTTCTGACCAGTAAAGAAATTATCAACCACAATCACAC