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Detailed information on CNT30508435


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677946Solanum lycopersicumSetaria viridis6.4553.4583.87124reverse complement
CNT30493672Solanum lycopersicumOlea europaea8.2241.6984.81158forward
CNT30505424Solanum lycopersicumNicotiana attenuata6.4526.6186.29124reverse complement
CNT3092080Solanum lycopersicumSolanum tuberosum6.4521.2786.29124reverse complement
CNT30184864Solanum lycopersicumSecale cereale6.421.2484.55123reverse complement
CNT30303462Solanum lycopersicumTriticum aestivum6.426.1184.55123reverse complement
CNT30224696Solanum lycopersicumHordeum vulgare6.455.9184.55123reverse complement
CNT30396975Solanum lycopersicumTriticum turgidum6.426.883.74123reverse complement
CNT30664266Solanum lycopersicumTriticum dicoccoides6.438.5684.55123reverse complement
CNT30213928Solanum lycopersicumHelianthus annuus6.4555.1185.48124reverse complement
CNT30725732Solanum lycopersicumLupinus angustifolius6.4527.4986.29124reverse complement

Expression of CNT30508435

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MNQCIQLFHISTNHIWLTSKLENKISIKF*

>peptide 2 (30 aa)
MEMKTYQGKSCIYKMEKLVFSLDGNSNYSR*

>peptide 3 (29 aa)
MKYEPMHTTVSYKYQPHLVDFKVGKQDKH*

>peptide 4 (34 aa)
MKNQPSQHRSISFHPVLVHLKDYEEYDQKRKENH*

>peptide 5 (38 aa)
MATPTIQDRKYISNKHYTTSLFISSSLLKEVTKVTEIV*

>peptide 6 (53 aa)
MTLCLQVTSSAQCSVSISSIGRPELSFIFLQFGQSSLDSSKLLYLSTSIFQTN*

>peptide 7 (45 aa)
MLVKTPHSRNWMFREIGVIFLLEKISTVGSSFSPFKTTCSSDIFE*

>peptide 8 (91 aa)
MLCKTQGMVVYIIAYKPACIIRGHYFISHLCQYLGHFLHRKRSLHKERTQYKEKWYDTYRCRRQTKINCSWIRSYRKQLFPVGAICRKIRC*

>peptide 9 (65 aa)
MDSEPTILSFQKAYDFVFTSYFLSSVLCVYFQHRTPRIVFYISTIRPIVTRQLKAVIPKHFYLPN*

Sequence

>CNT30508435
TAAAGCATTACATTTATATCCAGATCAACCTTCTTCCGCATACACAGCATAAATAACAAGGCAAATACACTTCCAGACACAGAAGTCGAGGACTAGTATG
AAGAGGGGAACGTGTACAAATAGTGATCGGACACCATTATGCTCTGCAAAACGCAAGGAATGGTAGTATACATAATTGCATACAAACCGGCCTGCATCAT
CAGAGGTCATTACTTCATATCCCATCTTTGCCAATACCTTGGTCATTTCCTCCACCGGAAGAGAAGTCTACACAAAGAGAGAACACAGTATAAAGAGAAG
TGGTACGACACCTATAGGTGTCGAAGACAAACAAAAATAAATTGTTCCTGGATTAGAAGTTACAGGAAGCAGCTATTTCCAGTCGGTGCGATCTGTAGAA
AGATTAGATGCTAGTAAAAACTCCCCACTCCAGAAACTGGATGTTCAGAGAAATCGGTGTGATCTTCCTACTGGAAAAAATTTCCACAGTGGGCTCTTCT
TTTTCCCCATTTAAAACTACCTGTTCGTCTGATATCTTTGAATAGGGATACTACCATGTGGTCCAAGATTAAGCTTTAACCTTAATTATCAAAAAGAAAA
CAAAAAAGAAGTGGAGAAACGTAAGTTGATTTCCCTTCCTTTAGTTACTAAGATTTTCATTTTTCTAAGTTCGAAAAGTCCAAAGTACACAGACTAGACC
CGGAGCTTCGATACGGTTTCTCGATCCAAGATCCATGTATCGCAGACCGTCCGTTCTTAGGTAGATAGGGAAAATTGAAAGAACTGATTATGCAGGGATC
CCTGAATCAAATAAAGGTATGGAAATGAAAACATATCAAGGAAAATCATGTATATATAAGATGGAGAAATTAGTGTTTAGCTTGGATGGCAACTCCAACT
ATTCAAGATAGGAAATATATTTCCAACAAGCACTACACCACTTCGTTATTCATCAGCTCCTCCCTCCTCAAGGAAGTCACAAAAGTGACTGAGATAGTAT
GAAGCAAAGCAAAAGTGAAATAATTTAGAAGCCACGGTTATTGGTCTTGGTAACAGTTCACAATGTCATAATCCCTGGAAACTAGAATATTTTTCAGTAA
AAATAAATGAATAAAAATCTTTAAAAAGTTCATGAGCTCGGAATACTTGAGAGAAGAAATTGGATTCGAACTGTATATCATAAAATGAAGAATCAACCCT
CGCAACATAGGTCCATATCTTTCCATCCGGTCCTGGTGCATTTAAAGGATTATGAAGAATATGACCAGAAAAGGAAAGAGAACCATTGAGGCTGGAATAT
TAAGCATTTAACTCAAGGTTTAGCATGTATAAGCATGGACAGTGAACCAACAATCTTGAGCTTCCAAAAAGCTTATGACTTTGTGTTTACAAGTTACTTC
CTCAGCTCAGTGCTCTGTGTCTATTTCCAGCATAGGACGCCCAGAATTGTCTTTTATATTTCTACAATTCGGCCAATCGTCACTCGACAGCTCAAAGCTG
TTATACCTAAGCACTTCTATCTTCCAAACTAACTAATTTTTTAGATCATTATTTACAAGGGTCATTCCCTAGTAGGGTCATACATTACTTTTACTTGTCA
AACAAGTGGATAATCATCACCAATACTTCATATAAAGGAAGTAAACAATCAACTTCTCTGGTCTTGCCGTCCTGCTTCCCTTTTGGAAACCAAGACAAAG
TGTTAACTCAAAAAATGGAGTCTAACAGTGAAGTGTATAGCAAACTCCCTTCAACTTTTAAAAGATGGTATATAAACTTCAATGAAGTATGAACCAATGC
ATACAACTGTTTCATATAAGTACCAACCACATTTGGTTGACTTCAAAGTTGGAAAACAAGATAAGCATTAAATTTTAATAACCATTCTACAGAAATCATG
AGAGATGGATGCAAGAAATCATA