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Detailed information on CNT30508427


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675375Solanum lycopersicumSetaria viridis23.9229.4384.3483forward
CNT30523795Solanum lycopersicumSetaria italica32.5618.2683.19113forward
CNT30125320Solanum lycopersicumPhyscomitrium patens30.2610.7983.81105forward
CNT30178172Solanum lycopersicumSecale cereale30.8419.4982.24107forward
CNT30283676Solanum lycopersicumTriticum aestivum24.7813.3384.8886forward
CNT30591253Solanum lycopersicumMusa acuminata18.7320.8389.2365forward
CNT30435418Solanum lycopersicumAegilops tauschii23.9219.385.5483forward
CNT30240007Solanum lycopersicumAvena sativa23.9214.885.5483forward
CNT30464912Solanum lycopersicumSaccharum spontaneum23.349.7485.1981forward
CNT30141675Solanum lycopersicumLolium perenne23.929.2984.3483forward
CNT30719851Solanum lycopersicumTriticum spelta24.7811.9884.8886forward
CNT30622400Solanum lycopersicumCajanus cajan25.949.8484.4490forward
CNT30596421Solanum lycopersicumOryza meridionalis23.9211.8284.3483forward
CNT30148402Solanum lycopersicumBrachypodium distachyon30.8421.7983.18107forward
CNT3099660Solanum lycopersicumOryza rufipogon23.0517.6683.7580forward
CNT30585391Solanum lycopersicumEchinochloa crusgalli23.9212.7584.3483forward

Expression of CNT30508427

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MNDKHKRRFLSPFSSNPPSKLNILGHDGNPLCVDCTEIGIFKEPNEVSFSSLL*

Sequence

>CNT30508427
CTCCAAATCATAGCATGAGCAGCACCTTTAATTGTGATAAAATGAACTACAGATTTCATTAATCAGATCTCAAAATAGTACTAAACCAGAGGTTTATATA
ATTTGATCTACACAAACATTTAACAGAAGAAGCAAGCAAAGCCCTAAAACAGAACACAAATGAATGATAAACATAAAAGAAGGTTCCTAAGCCCTTTCTC
CTCGAATCCTCCTAGCAAGCTGAATATCCTTGGGCATGATGGTAACCCTCTTTGCGTGGATTGCACAGAGATTGGTATCTTCAAAGAGCCCAACGAGGTA
AGCTTCAGCAGCCTCTTGTAGCGCAGCCACAGCACTGCTCTGAAATC