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Detailed information on CNT30508399


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJF9|SAU21_ARATH, E-value = 5e-30

BLAST vs NONCODE:
NONSLYT000535, E-value = 2e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019729Solanum lycopersicumCitrullus lanatus31.610.8286.5767forward
CNT30727279Solanum lycopersicumCorchorus capsularis39.156.9484.3483forward
CNT30526628Solanum lycopersicumPhaseolus vulgaris43.431.5186.9692forward
CNT30198880Solanum lycopersicumPisum sativum36.326.6485.7177forward
CNT30487885Solanum lycopersicumOlea europaea39.155.9284.3483forward
CNT3043292Solanum lycopersicumPrunus dulcis39.6216.884.5284forward
CNT30560985Solanum lycopersicumActinidia chinensis57.5519.9783.61122forward
CNT3089315Solanum lycopersicumVigna radiata50.4713.7284.11107forward
CNT30171686Solanum lycopersicumTrifolium pratense60.3817.0282.81128forward
CNT30144937Solanum lycopersicumMedicago truncatula45.7523.3783.5197forward
CNT3082566Solanum lycopersicumBrassica juncea50.4715.0782.24107forward
CNT30655496Solanum lycopersicumRosa chinensis58.9643.484125forward
CNT30716413Solanum lycopersicumMalus domestica golden35.8513.7784.2176forward
CNT30645602Solanum lycopersicumCannabis sativa58.0219.2586.99123forward
CNT3028532Solanum lycopersicumTheobroma cacao60.3812.6182.81128forward
CNT30337201Solanum lycopersicumCynara cardunculus61.7935.582.44131forward

Expression of CNT30508399

Peptides detected in this lncRNA

>peptide 1 (45 aa)
GLVPFSLPQYRCEIDEQIFAAGNSHTTHWMVEAKFFLRLTKQVLK*

>peptide 2 (39 aa)
GDWFPSHFRNIDVRLMNKSSLQGIVTPPIGWSKPNSSSD*

Sequence

>CNT30508399
GGGGACTGGTTCCCTTCTCACTTCCGCAATATAGATGTGAGATTGATGAACAAATCTTCGCTGCAGGGAATAGTCACACCACCCATTGGATGGTCGAAGC
CAAATTCTTCCTCAGATTGACTAAGCAAGTCTTGAAATAAAGGTTGGCTCAAGAATGATATAGGGATCACAAATCTCTTCTTCTGCTTTTCCCCAACATA
AACAGCAAAGTG