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Detailed information on CNT3050826


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 6e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318271Cucumis sativusCorylus avellana37.2412.883.46127forward
CNT30546681Cucumis sativusIpomoea triloba35.1925.5384.17120forward
CNT30703567Cucumis sativusQuercus lobata35.7824.1684.43122forward
CNT30616210Cucumis sativusSesamum indicum28.747.8387.7698forward
CNT3069058Cucumis sativusQuercus suber34.913.682.35119forward
CNT30197034Cucumis sativusPisum sativum47.820.1584.66163forward
CNT30712284Cucumis sativusGlycine max48.9735.5386.83167forward
CNT3042757Cucumis sativusPrunus dulcis32.2618.1582.73110forward
CNT30172567Cucumis sativusTrifolium pratense43.9921.9988150forward
CNT3059678Cucumis sativusArabidopsis lyrata38.4227.2383.97131forward
CNT3082467Cucumis sativusBrassica juncea26.3912.5584.4490forward
CNT30261175Cucumis sativusBrassica rapa39.328.3982.09134forward
CNT30611328Cucumis sativusArabis alpina3929.1786.47133forward
CNT30211420Cucumis sativusHelianthus annuus41.0628.2386.43140forward
CNT30619612Cucumis sativusCajanus cajan43.735.5684.56149forward
CNT30357929Cucumis sativusLactuca sativa30.523.2181.73104forward
CNT30414711Cucumis sativusPapaver somniferum50.1517.8983.63171forward
CNT3052246Cucumis sativusAmborella trichopoda35.7810.1282.79122forward
CNT3024855Cucumis sativusPopulus trichocarpa39.8823.1781.62136forward
CNT30325970Cucumis sativusAsparagus officinalis41.0620.2980.71140forward

Expression of CNT3050826

Peptides detected in this lncRNA

>peptide 1 (31 aa)
REKNENLIAHGINEVKLPSLPTNEELTYINQ*

>peptide 2 (68 aa)
MVYNHSWNQTLNLTSKTIQSPSLPFQSINHIHGSHRFSPSMLCVGNSITNHILKENLQNPSGFFIDQST

Sequence

>CNT3050826
GGAGAGAAAAAAACGAAAATCTTATAGCACATGGCATCAATGAAGTAAAGCTTCCATCACTTCCAACTAATGAGGAATTAACTTACATTAATCAATAAGA
ACGAGTTCGACTACAAAATACAAGATCAAACGTAATGGTCTACAATCATTCTTGGAATCAAACCCTAAACCTAACCTCCAAAACCATACAAAGTCCTTCC
CTGCCTTTTCAAAGCATAAACCACATCCATGGCAGTCACCGTTTTTCTCCTAGCATGCTCTGTGTAGGTAACAGCATCACGAATCACATTCTCAAGGAAA
ATCTTCAAAACCCCTCTGGTTTCTTCATAGATCAATCCACT