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Detailed information on CNT30508075


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235444Nicotiana attenuataBrassica oleracea12.3921.1987.7257forward
CNT3029428Nicotiana attenuataTheobroma cacao11.0924.1790.251forward

Expression of CNT30508075

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEVMSRFCFLETGKEEEADLRPVKGATMLA*

>peptide 2 (87 aa)
MLLHLVKYTDSAEFFIVLSVYCKLNPYNIYYKLDLHALNSSTIASNGSNVKVLFPGNREGGGGGLEASEGCNHAGLSSIGAGRNSSC*

Sequence

>CNT30508075
CCTCGCTCAAATCAGGAAGGTATGAGAGTGTCTCGTACTTCTTCTTGTTAATTGGTGGCCACACCTACATATATCCCACATAAAAAGTTTAAAGAAGCTC
CATAAATGTTACTCCACTTAGTGAAATATACTGATAGTGCAGAGTTCTTTATAGTACTATCAGTATATTGCAAGTTAAATCCATATAATATATACTACAA
ATTAGACCTGCATGCATTGAACTCTTCCACCATTGCTAGCAATGGAAGTAATGTCAAGGTTTTGTTTCCTGGAAACAGGGAAGGAGGAGGAGGCGGACTT
GAGGCCAGTGAAGGGTGCAACCATGCTGGCTTGAGCAGCATTGGCGCCGGTCGCAACAGCAGCTGCTGAGGACATAACTGAGGAAGCCATTTCTGAGAAC
AATTTCTTGGCTTAAAGCTATTGCTACCTTTTACCTTTGCTTTCAGGAGGGTTATTTGAT