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Detailed information on CNT30508033


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639835Nicotiana attenuataNymphaea colorata75.575.1392.62514reverse complement
CNT30531232Nicotiana attenuataEucalyptus grandis94.0292.4493.133131forward
CNT30318007Nicotiana attenuataCorylus avellana83.679.6693.682784reverse complement
CNT30519180Nicotiana attenuataJuglans regia94.0894.7493.973133forward
CNT30619309Nicotiana attenuataSesamum indicum53.2180.6693.961772reverse complement
CNT30283199Nicotiana attenuataChenopodium quinoa73.6690.1594.942453forward
CNT3021656Nicotiana attenuataCitrullus lanatus93.7851.5994.333123forward
CNT30632341Nicotiana attenuataVigna unguiculata94.2392.9293.123138forward
CNT30195048Nicotiana attenuataPisum sativum94.0283.2592.853131forward
CNT30711135Nicotiana attenuataGlycine max80.9384.8393.062695forward
CNT3047210Nicotiana attenuataPrunus dulcis75.1177.7493.122501forward
CNT30383013Nicotiana attenuataTriticum turgidum75.5694.890.662516forward
CNT30544747Nicotiana attenuataBrassica napus75.898.5691.842524reverse complement
CNT30312195Nicotiana attenuataCamelina sativa51.4468.6892.181713reverse complement
CNT3076930Nicotiana attenuataBrassica juncea94.2691.3692.323139forward
CNT30265711Nicotiana attenuataBrassica rapa76.799.6991.932554forward
CNT30445720Nicotiana attenuataSaccharum spontaneum48.8676.4993.31627reverse complement
CNT30210115Nicotiana attenuataHelianthus annuus90.342.2187.933007forward
CNT30355977Nicotiana attenuataLactuca sativa45.6886.8693.751521forward
CNT30433917Nicotiana attenuataPapaver somniferum75.5392.2693.842515forward
CNT3035495Nicotiana attenuataCucumis melo94.2359.5894.173138forward
CNT30583181Nicotiana attenuataEchinochloa crusgalli67.696.0393.032251forward
CNT30335982Nicotiana attenuataCynara cardunculus90.6992.0289.013020reverse complement

Expression of CNT30508033

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MPRHLISDAHEWINEIPTLSVYYPAKPQPRERAWQNQRGKKTLLSLTLVPLCEMT*

>peptide 2 (51 aa)
MRPGRMRNGVEPVRRSTRGVDQRRLGGRPKPGLLIRPWNAVSSIVVGSARL*

>peptide 3 (32 aa)
MSRLQPVACLGSPTLIALRCSDRDPRSGGTTR*

>peptide 4 (34 aa)
MNGLTRFPLSLSTIQRNHNQGNGLGRISGERRPC*

>peptide 5 (79 aa)
MEQCRQGKSAKWIRNFGKRIGSEGWAWGSQSRTRRLSADCSSCSRGESGSSRAGRGMNWERFLRGPSPGVEQPTQNWYG*

>peptide 6 (45 aa)
APSLMVAVESWDGYWPPVRPQRAVGLNACPRRWTSRQVVVETQLS*

>peptide 7 (40 aa)
MNRKPGYGAKLRANLDPTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 8 (81 aa)
MSSAVDRAQVPWKGAPERVRALLCPDPVAPRGTVYESGCLGMQPKSGGEFRPTLNTGERPIANKYCEGKMKRNLKRESKSD*

>peptide 9 (39 aa)
AQSHGRGGVVGRILASRAPPARGWPKCVSTTMDVTTSGG*

>peptide 10 (37 aa)
MRVHDDGRHDKWWLKLNSRNVAAPTRRMFGLPDPYRA*

Sequence

>CNT30508033
GCGCCCAGTCTCATGGTCGCGGTGGAGTCGTGGGACGGATATTGGCCTCCCGTGCGCCCCCAGCGCGCGGTTGGCCTAAATGCGTGTCCACGACGATGGA
CGTCACGACAAGTGGTGGTTGAAACTCAACTCTCGTAATGTCGCGGCTCCAACCCGTCGCATGTTTGGGCTCCCCGACCCTTATCGCGCTTAGGTGCTCC
GACCGCGACCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCG
AACCAGGAATACCCAGCCTTAGAATCGGGCGCTTCCGCCGTCCGAATTGTAGTCTGGAGAAATGTCCTCAGCGGTGGACCGGGCCCAAGTCCCCTGGAAG
GGGGCGCCAGAGAGGGTGAGAGCCCTGTTGTGCCCGGACCCTGTCGCACCACGAGGCACTGTCTACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGG
GCGGTGAATTCCGTCCAACGCTAAATACGGGCGAGAGACCGATTGCGAACAAGTACTGCGAGGGAAAGATGAAAAGGAATTTGAAAAGAGAGTCAAAGAG
TGATTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGAGGAACGGTGTTGAACCGGTCCGCCGATCAACTCGGGGCGTG
GACCAGCGTAGATTGGGGGGGCGGCCAAAGCCCGGGCTTTTGATACGCCCGTGGAACGCCGTCTCCTCGATTGTGGTAGGCAGCGCGCGCCTCTAGCGTG
CTTCGGCATCTGCGCGCTCCGGACACTGGCCTGTGGGCTCCCCATTCGACCTGTCTTGAAACACGGACCAAGGAGTCTGATATGTGCGAGTCAACGGGCG
AGTAAACCCGTATGGCGTAAGGAAGCTGATTGGTGGAATCCCCCTGAGGGGTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCA
TACCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTGGTGGAGGCCCGTAGCGATACTGACGTGCAAATCGTT
CGTTTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCACCGAAGTTTCCCTTAGGATAGCTGGAGCTCGCGTGCGAGTTC
TATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTTTGTTGAGCC
GCGCCACGGAATCAAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCAAACTGCGCGCT
AACCTAGATCCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAA
TCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTACACCCGGCCGTCGGGGCAAGTGCTAGGCCCCGATGAGTAGGAGGGCGCGGCGGTCGC
TGCAAAACCTTGGGCGTGAGCCTGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGG
AAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGGGTCGGGGGAACCCCGACAGATAGCGCGTTTCGCGCGTACTCCGAAAGGGAA
TCGGGTTAAAATTCCTGAACCGGGACGTGGCGGTTGACGGCAACGTTAGGAAGTCCGGAGACGTCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTT
AACAGCCTGCCCACCCTGGAAACGACTCAGTCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCGCCCCCGGCGGCCC
TTGAAAATCCGGAGGACCGAGTGCCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGG
CAAGGGAAGTCGGCAAAATGGATCCGTAACTTTGGGAAAAGGATTGGCTCTGAGGGCTGGGCATGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGCGG
ACTGCTCGAGCTGCTCCCGCGGTGAGAGCGGGTCATCGCGTGCCGGCCGGGGGATGAATTGGGAACGGTTCCTTCGGGGGCCTTCCCCGGGCGTCGAACA
ACCAACTCAGAACTGGTACGGATAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTACGATGGTCCCTGCTAATGTTTACGCAATTTGATTTCTGTC
CTGTGCTCTAAATGTCAAAGTGAAGCGATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTATCTTAAGGTAGCCAAATGCCTCGTCATCTAA
TTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTCTCTCTGTCTACTATCCAGCGAAACCACAACCAAGGGAACGGGCTTGGCAGAATCAGCGGGG
AAAGAAGACCCTGTTGAGCTTGACTCTAGTCCCACTTTGTGAAATGACTTGAGAGGTGTAGTATAAGTGGGAGCCGAAAGGCAAATGTGAAATACCACAA
CTTTTAACGTTATTTTACTTATTCCGTGAATCGAAAGCGGGGCACTGCCCCTCTTGGACCCAAGGCTTGCTCGCAGGCCGATCCCGGCGGAAGACATTGT
CAGGTGGGGAGTTTGGCTGGGGCGGAAAATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAGAAGG
GTAAAAGCTCGTTAGATTCTGATTTCCAATACGAATACGAACCGTGAAAGCGTGGCCTAACGATCCTTTAGACCTTCGAAATTCGAAGCTAGAGGTGTCA
GAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGC
AGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACCGATGCAGTGT
CGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTG
GATTATGACTGAACGCCTCTAAGTCAGAAT