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Detailed information on CNT30507933


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532002Nicotiana attenuataEucalyptus grandis97.7954.3895.321988forward
CNT30550233Nicotiana attenuataIpomoea triloba93.1667.1997.521894forward
CNT30619307Nicotiana attenuataSesamum indicum73.9389.7395.481503forward
CNT30730400Nicotiana attenuataCorchorus capsularis64.0998.2795.861303reverse complement
CNT30526827Nicotiana attenuataPhaseolus vulgaris62.3799.7696.371268reverse complement
CNT30711221Nicotiana attenuataGlycine max67.24100.0797.371367forward
CNT30163337Nicotiana attenuataPistacia vera68.0399.9395.011383forward
CNT30545324Nicotiana attenuataBrassica napus85.64100.2993.911741reverse complement
CNT30311297Nicotiana attenuataCamelina sativa96.2197.1293.971956forward
CNT3060563Nicotiana attenuataArabidopsis lyrata95.4388.5495.311940reverse complement
CNT3075807Nicotiana attenuataBrassica juncea96.896.7194.511968forward
CNT30217525Nicotiana attenuataKalanchoe fedtschenkoi87.4699.1191.91778forward
CNT30653443Nicotiana attenuataRosa chinensis63.8598.6395.151298forward
CNT30355986Nicotiana attenuataLactuca sativa81.660.7792.771659forward
CNT30434045Nicotiana attenuataPapaver somniferum97.3967.3994.61980forward
CNT30574469Nicotiana attenuataVitis vinifera71.3279.1196.141450forward
CNT3023562Nicotiana attenuataPopulus trichocarpa97.3488.6696.111979reverse complement
CNT30496898Nicotiana attenuataDigitaria exilis73.9383.0892.081503forward
CNT30558388Nicotiana attenuataPanicum hallii64.6894.6794.751315forward

Expression of CNT30507933

Peptides detected in this lncRNA

>peptide 1 (43 aa)
VSLGGAAVGADLGGSSKYSNENFEGRRGERFHVNGTCTWVSRS*

>peptide 2 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNELGRISGERRPC*

>peptide 3 (85 aa)
MEQCRQGKSAKWIRNFGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSPRAGRGTDWERFLRGLPRASNSQLRTGTDKGNPTV*

>peptide 4 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 5 (44 aa)
MRPPSACRPAVGASGPQGHVSLAKSSRRKSRGGRLEVQFPSSGG*

Sequence

>CNT30507933
GTGAGCCTGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGA
ACGGCACTTGCACATGGGTTAGTCGATCCTAAGGGTCGGGGGAACCCCGACAGATAGCGCGTTTCGCGCGTACTCCGAAAGGGAATCGGGTTAAAATTCC
TGAACCGGGACGTGGCGGTTGACGGCAACGTTAGGAAGTCCGGAGACGTCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACAGCCTGCCCACC
CTGGAAACGACTCAGTCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGG
ACCGAGTGCCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCA
AAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGACTGCTCGAGCTGCT
CCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGTTCCTTCGGGGGCTTCCCCGGGCGTCGAACAGCCAACTCAGAACTGG
TACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGTTTACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTC
AAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGA
ATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGAGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTG
AGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGTATAAGTGGGAGCCGAAAGGCGAAAGTGAAATACCACTACTTTTAACGTTATTTT
ACTTATTCCGTGAATCGGAAGCGGGGCACTGCCCCTCTTTTTGGACCCAAGGCTTGCTTGCAGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTT
TGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAGAAGGGTAAAAGCTCGTT
TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAACGATCCTTTAGACCTTCGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTACCAC
AGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAG
TGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACAGTGTCGCAATAGTAAT
TCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTATGACTGA
ACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCCGCCGTCCGCTTGCCGACCCGCAGTAGGGGCCTCTGGCCCCCAAGGGCACGTGTCGT
TGGCTAAGTCATCGCGGCGGAAGAGCCGCGGTGGCCGCCTTGAAGTACAATTTCCATCGAGCGGCGGGTAGAATCCTTTGCAGACGACTTAAATACGCGA
CGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATTCAGCCCTTTGTCGCTCCGATTCGTCCCTCCCCTTCCAAACCAAACAATT
TCTAACTTTTCCGAAAAGAGGTTTGCTCCTCCC