« Back to Cucumis sativus search


Detailed information on CNT3050773


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 1e-91

BLAST vs NONCODE:
NONTPRT002505, E-value = 2e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Cucumis sativusEucalyptus grandis30.2547.8981.76170forward
CNT30316147Cucumis sativusCorylus avellana38.4328.9982.87216forward
CNT30700549Cucumis sativusQuercus lobata67.6296.281.58380forward
CNT30499549Cucumis sativusCoffea canephora73.4984.2980.39413forward
CNT30615836Cucumis sativusSesamum indicum36.353.2680.39204forward
CNT30277485Cucumis sativusChenopodium quinoa45.7330.1384.82257forward
CNT3020608Cucumis sativusCitrullus lanatus77.9499.3294.06438forward
CNT30727603Cucumis sativusCorchorus capsularis46.853.2484.41263forward
CNT3068683Cucumis sativusQuercus suber37.7243.0983.96212forward
CNT30524728Cucumis sativusPhaseolus vulgaris39.6841.379.82223forward
CNT30486152Cucumis sativusOlea europaea61.7438.3480.98347forward
CNT30503775Cucumis sativusNicotiana attenuata59.0774.9481.02332forward
CNT30636701Cucumis sativusCapsicum annuum48.0465.6980.74270forward
CNT3098150Cucumis sativusSolanum tuberosum24.3827.9686.13137forward
CNT30177095Cucumis sativusSecale cereale28.8311.6982.72162forward
CNT30223417Cucumis sativusHordeum vulgare21.7153.7482.79122forward
CNT3084565Cucumis sativusVigna radiata59.6119.8279.4335forward
CNT30539234Cucumis sativusBrassica napus23.8414.6484.33134forward
CNT30511842Cucumis sativusSolanum lycopersicum22.7827.9582.81128forward
CNT30145616Cucumis sativusMedicago truncatula70.288782.28395forward
CNT30261302Cucumis sativusBrassica rapa44.8448.7480.56252forward
CNT30131528Cucumis sativusLolium perenne28.1134.2781.01158forward
CNT30653881Cucumis sativusRosa chinensis32.0316.8583.89180forward
CNT30718631Cucumis sativusMalus domestica golden68.3366.980.73384forward
CNT30341852Cucumis sativusEragrostis tef28.8311.7281.48162forward
CNT30477892Cucumis sativusArabidopsis halleri42.5322.3482.43239forward
CNT30359656Cucumis sativusLactuca sativa73.1324.3282.73411forward
CNT30425316Cucumis sativusPapaver somniferum52.6761.4183.78296forward
CNT30570592Cucumis sativusVitis vinifera37.1964.7181.82209forward
CNT30645151Cucumis sativusCannabis sativa50.5329.883.8284forward
CNT3055709Cucumis sativusAmborella trichopoda32.3827.8384.62182forward
CNT30332943Cucumis sativusCynara cardunculus71.8977.5482.43404forward
CNT30726386Cucumis sativusLupinus angustifolius50.5331.5980.63284forward

Expression of CNT3050773

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MMNQIILPSSEEIINNDHAIPSLNQTVHKMASNESSTTSNNNPQVPLRQSRRNSPRQIHPP*

Sequence

>CNT3050773
ACCGATGGGATTGACGTTGCCCCAGTAGGTTTCAGCCTGCGGGTGTTGGAGTGGATCGCCGTAGACTTCGCTGGTGCTGGTGAGTAAAAAGCGGGCGCCG
ACTCTCTTCGCAAGCCCTAGCATGTTCAATGTGCCGACAACATTGGATATGATTGTCTTGACAGGATTGAATTTATAATGAACAGGAGAAGCAGGGCAAG
CCAAGTGATAGATCTGATCAACTTCCAGTAGAATCGGCTGAACAACGTCGTGTCGAATCAGTTCAAATCTCGGATTTCCAAAATGATGAACCAGATTATC
CTTCCGTCCAGTGAAGAAATTATCAACAACGATCACGCTATCCCCTCTCTCAATCAAACGGTCCACAAGATGGCTTCCAACGAATCCAGCACCACCAGTA
ACAACAATCCTCAAGTTCCTCTTCGTCAATCCCGGCGGAACTCTCCCCGCCAAATTCACCCGCCCTAACGGTCCTTCACGGCGAGTTTCATACAAAACTC
TCCGCATCGGGATCGTCGAATCCAAACGAACAAACGAATTAAACGCCCGGTGATGATCATCA