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Detailed information on CNT3050758


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-144

BLAST vs NONCODE:
NONMTRT002043, E-value = 2e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30311067Cucumis sativusCamelina sativa74.5249.0985620forward
CNT30612915Cucumis sativusArabis alpina74.7663.8684.24622forward
CNT30174754Cucumis sativusVigna angularis74.7673.7887.46622forward

Expression of CNT3050758

Peptides detected in this lncRNA

>peptide 1 (49 aa)
YNAMFISFRKISTHSHKEKHKHFGKSILFNSNNRPPTGQLFPSTKSSTH*

>peptide 2 (40 aa)
MVSELSTSRVMVFPVNVLTKICIPPRRRNTRWRVDSFWML*

>peptide 3 (40 aa)
MVSELSTSRVMVFPVNVLTKICIPPRRRNTRWRVDSFWML*

Sequence

>CNT3050758
TATACAATGCGATGTTCATTTCATTTAGAAAAATAAGTACACATTCACATAAAGAAAAACACAAACATTTCGGGAAATCAATTTTATTCAACAGCAATAA
TAGGCCGCCTACAGGCCAGCTGTTTCCAAGTACCAAATCTTCAACACATTAACATTCAGAAATCATTCAAAGACAATCACCAACACCCAACAACATCCAC
CACCATCTAAAAACCACCACGGAGACGCAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGCTTC
CCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCTAGGG
TGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCATACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC
AAGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCA
ATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCATACCACCACGAAGACGCAACACAAGGTGGAGGG
TAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCCTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTT
GTCCTGGATCTTGGCCTTGACGTTGTCGATCG