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Detailed information on CNT30507460


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41385|PSAL_SPIOL, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533956Nicotiana attenuataEucalyptus grandis54.4623.6482.42165forward
CNT30516757Nicotiana attenuataJuglans regia62.7138.3881.58190forward
CNT30376200Nicotiana attenuataArabidopsis thaliana33.9910.6782.52103forward
CNT3021623Nicotiana attenuataCitrullus lanatus64.3614.3680.51195forward
CNT30730016Nicotiana attenuataCorchorus capsularis64.0329.3184.02194forward
CNT30564216Nicotiana attenuataActinidia chinensis52.1570.8581.01158forward
CNT30172489Nicotiana attenuataTrifolium pratense35.978.4685.32109forward
CNT30217112Nicotiana attenuataKalanchoe fedtschenkoi34.9811.0583.96106forward
CNT30129085Nicotiana attenuataCorymbia citriodora65.0218.7181.73197forward
CNT30359901Nicotiana attenuataLactuca sativa33.3314.982.18101forward
CNT30570425Nicotiana attenuataVitis vinifera54.799.5581.33166forward
CNT3031830Nicotiana attenuataTheobroma cacao63.0452.3384.29191forward
CNT3037832Nicotiana attenuataCucumis melo32.0111.5285.5797forward
CNT30112090Nicotiana attenuataFicus carica54.138.0185.37164forward
CNT3049017Nicotiana attenuataCucumis sativus67.6620.980.49205forward

Expression of CNT30507460

Peptides detected in this lncRNA

>peptide 1 (40 aa)
EVKILNSTLPAYSVFLNGPAFTNGPTSRNPWASLYKWANK*

>peptide 2 (54 aa)
MGQPLQMGQQVGIHGPGPLLLLGEVGSLRSGRPVSWIGTKQSMGLRSLEFQDYQ*

>peptide 3 (44 aa)
MDQPLQMGQQVGIHGPAFTNGPTSRNPWARPTSTPRRSGFTAVR*

Sequence

>CNT30507460
ATGAAGTTAAAATTTTGAATTCGACTTTACCTGCATATTCAGTGTTTCTTAATGGACCAGCCTTTACAAATGGGCCAACAAGTAGGAATCCATGGGCCAG
CCTTTACAAATGGGCCAACAAGTAGGAATCCATGGGCCAGGCCCACTTCTACTCCTCGGAGAAGTGGGTTCACTGCGGTCCGGTAGGCCGGTAAGTTGGA
TAGGTACCAAGCAATCAATGGGCTTGAGGTCACTGGAGTTTCAAGACTACCAATGAAAGGGTCACCATTCAGGGGCTGAATCACTTGGTAAGTGGGCTAC
ATA