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Detailed information on CNT30507211


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 4e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30509419Nicotiana attenuataSolanum lycopersicum27.918.7885.19108forward

Expression of CNT30507211

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MSYLPLIDFSHKRYNREMWSGMSFVDIGNGQFLIGLGLLTVVSNGRELIRRRISCEPLLHFEILFVACFMDSGDGDLHVVT

>peptide 2 (37 aa)
DGANLYFCNIVLMSKCIDSYYSQNYQVTFITPPPLII*

Sequence

>CNT30507211
CGATGGGGCAAATCTTTATTTTTGCAATATAGTACTCATGAGCAAATGTATTGATTCTTATTATTCGCAAAATTATCAGGTCACCTTTATTACTCCACCA
CCACTCATAATATAAACACGAAAGCAACATTGACACATATTATATGTCATACTTACCCCTGATAGATTTCAGTCACAAAAGATACAACAGAGAAATGTGG
AGTGGAATGAGTTTCGTAGACATCGGAAATGGACAGTTTCTCATCGGACTTGGTCTTCTTACAGTTGTCTCTAATGGCCGTGAGCTGATAAGGCGACGCA
TCAGTTGCGAGCCACTGCTCCACTTCGAAATTCTGTTTGTTGCATGCTTTATGGACTCCGGTGACGGTGACCTCCACGTAGTTACAG