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Detailed information on CNT30507146


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43188|CHS2_SOLTU, E-value = 3e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Nicotiana attenuataQuercus lobata15.4138.9581.1164forward
CNT30378024Nicotiana attenuataArabidopsis thaliana11.4722.1481.97122forward
CNT30381108Nicotiana attenuataManihot esculenta18.5235.379.7197forward
CNT30628839Nicotiana attenuataVigna unguiculata39.9437.3878.59425forward
CNT30486019Nicotiana attenuataOlea europaea36.2866.6777.98386forward
CNT3045136Nicotiana attenuataPrunus dulcis37.5964.3182400forward
CNT30156272Nicotiana attenuataPistacia vera30.0820.7580320forward
CNT3096393Nicotiana attenuataSolanum tuberosum43.0577.2384.5458forward
CNT30564019Nicotiana attenuataActinidia chinensis23.3133.4781.85248forward
CNT3087915Nicotiana attenuataVigna radiata23.8725.279.92254forward
CNT30610059Nicotiana attenuataGossypium raimondii33.1851.6882.15353forward
CNT30647274Nicotiana attenuataRosa chinensis37.8823.1780.65403forward
CNT30365392Nicotiana attenuataSorghum bicolor16.5430.3479.55176forward
CNT30355776Nicotiana attenuataLactuca sativa16.5430.3482.95176forward
CNT30151821Nicotiana attenuataPrunus persica37.5969.4480.75400forward
CNT30705527Nicotiana attenuataPrunus avium21.4349.2483.33228forward
CNT30645210Nicotiana attenuataCannabis sativa22.4631.5779.5239forward
CNT3030385Nicotiana attenuataTheobroma cacao9.2124.5684.6998forward
CNT3022840Nicotiana attenuataPopulus trichocarpa42.2946.278.89450forward
CNT30330773Nicotiana attenuataDioscorea rotundata1121.5181.2117forward
CNT30114123Nicotiana attenuataFicus carica30.6420.2980.37326forward

Expression of CNT30507146

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MILPNQIRSKYNPKFYIKFSNQTTLKWRHYEAQQSQLLAQAQIQKVHPNQGLLQLYQALLLLRPFSFHPK*

>peptide 2 (75 aa)
MSTPFMVQKTKWVIFDLGWSHSSMAFCAASLPNFGISTTTISCLASREGAMYSDILGFSFRISSVKCMYLFLIIDL

Sequence

>CNT30507146
CCACAATATATGCAAATACAGCACATGGGATTATAATCCTACATCTTATATGGGATAGATAATACAATGATTTTACCTAACCAAATACGGAGTAAATATA
ATCCCAAATTTTATATCAAATTTAGCAACCAAACGACCCTTAAGTGGAGACACTATGAAGCACAACAGTCTCAACTGTTAGCCCAGGCCCAAATCCAAAA
AGTACACCCCAATCAAGGCCTTCTCCAGTTGTACCAAGCCCTTCTTTTGCTGAGGCCTTTCTCATTTCATCCAAAATAAACAAAACACAAGCACTAGACA
TATTTCCATAGTCACTCAACACTTGTCTTGTAGCCCGAAGTTTTTCAGGCTTTAGGCCCAATGTTAGTTCAACTTGGTCCAAAATAGCACGCCCGCCTGG
GTGAGCGATCCAAAAAATCGAGTTCCAATCTGAAAGGCCCAATGGTTGGAATGCTTCTATTAGGCTCTTCTCAATGTTCTTTGAGATCAATCCAGGAACA
TCTTTGAGTAAGTGAAATGTTAGCCCAACTTCACGGAGGTGACCGTTGATAGCGCCATCGCTATCTGTGAGTAGAGTTTGGGCTGCAGAGACAAGCTCGA
ATAAAGGGCTTGCCCGACCATACTATCCAAATGAGTATCACTTGGGCCTTGAAACGTGAATGCAGTGATCTCCGAGCAAACAACAAGGACTCGAGCGCCC
TGGTTGTTTTCGGCTAAGTCCTTAGCCAATCGGAGAACAGTGCCGCCAGCGAAGCAACCTTGTTGGTACAACATGAGTCGCTTGACTGAGGGCCGAAGCC
CGAGGAGCTTAGTCAGCTGGTAGTCGGCCCCGGGCATGTCAACTCCATTCATGGTGCAAAAAACCAAATGGGTAATTTTTGACTTGGGCTGGTCCCATTC
TTCGATGGCATTTTGTGCTGCTTCTTTGCCCAATTTTGGTATTTCAACCACCACTATATCTTGCCTAGCATCAAGAGAAGGAGCCATGTATTCAGATATA
TTGGGATTCTCTTTTAGAATTTCCTCTGTTAAGTGCATGTACCTTTTCTTAATCATTGATTTGT