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Detailed information on CNT30506790


BLAST search results

BLAST vs Swiss-Prot:
sp|Q85FN2|ATPH_ADICA, E-value = 2e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678068Nicotiana attenuataSetaria viridis28.1210.7990.06171reverse complement
CNT30632292Nicotiana attenuataVigna unguiculata26.975.4790.24164reverse complement
CNT30656987Nicotiana attenuataTriticum dicoccoides25.9912.2491.14158reverse complement
CNT3017917Nicotiana attenuataZea mays28.124.1290.06171reverse complement
CNT30126536Nicotiana attenuataCorymbia citriodora21.7127.9785.61132reverse complement
CNT30689283Nicotiana attenuataTriticum urartu25.996.2391.14158reverse complement
CNT30596058Nicotiana attenuataOryza meridionalis20.8914.0890.55127forward
CNT30121210Nicotiana attenuataCitrus clementina27.964.3692.35170reverse complement

Expression of CNT30506790

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTYHESTDFCRF

>peptide 2 (33 aa)
MNKRMKSRNNSTNSSNQEMEERKSYGFTKTTVD*

Sequence

>CNT30506790
GTTATGGAAGAAAGACATGTATATGTGATATTAGATATTGACTAGTGCTAGTTATATATGAAATGAACTAAAGATATATTTTACTACTCTAGGGGATTCT
AATAGACTAGAAGTCCTTCCGGCCCCTTGTGACTGTGAATTGAATGAATAAACGGATGAAATCAAGAAATAATTCAACTAACAGTTCGAACCAAGAAATG
GAAGAACGAAAGTCGTATGGGTTCACAAAGACTACTGTGGACTAAAAAGTAAAAAAAGATATATCGAAGTAGTTCTGATGATTCAATAATCTTATTACTT
CAATCCGAAGTTCTTAGTTACTTCGACTGGATGAATCCTAGCGAGGGAATAATTAAGTCATAACTCATTGGTTGATTGTATCATTAACCATTTCTTTTTT
TTTGGTACGAGGAACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGATTGGCCGTAGGGCTTGCTTCTATTGGACCTGGAGTTGG
TCAAGGGACTGCTGCGGGTCAAGCTGTAGAGGGTATCGCGAGACAGCCTGAGGCAGAGGGAAAAATACGAGGAACTTATCATGAATCCACTGATTTCTGC
CGCTTCCG