CANTATAdb - search

Detailed information on CNT3050674

BLAST search results

BLAST vs Swiss-Prot:
sp|P08474|RBS_CUCSA, E-value = 8e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3020310	Cucumis sativus	Citrullus lanatus	16.82	20.9	92.86	126	forward
CNT30605276	Cucumis sativus	Gossypium raimondii	11.88	22.53	87.64	89	forward
CNT30355731	Cucumis sativus	Lactuca sativa	10.55	20.2	86.08	79	forward
CNT3038822	Cucumis sativus	Cucumis melo	27.1	45.62	90.64	203	forward

Expression of CNT3050674

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSSHIPLTIVRYSYQAVMGKPAEDLRPVNGATMLA*

>peptide 2 (31 aa)
WMKLIKPYRYHESISITQTQTPIEHFHREID*

Sequence

>CNT3050674
TGGATGAAATTGATTAAACCTTATCGTTACCACGAATCAATATCCATCACACAAACACAAACCCCAATTGAACATTTTCATAGGGAAATAGATTGAATTT
CCATGAGGAAAGATGCAAACAGGACCGATTGATTGATAGGATAATTGAAGAACAAATCAAAGCATCATTTATTCCAATTCGAATTGGAAAGTCGGGGAAA
TAAACATAGTGGGATTCAACAGACAAACCAAAACGTAAAATGGAAAAATAAGAAGGAAAAAAAAAGAGAGAAGAAAAAAATTAAAGGGGGGAAATTTGGT
TGAAACCACCCAAGTGATGGAGCTTTAAAAAAGGCAAATGATGGAACTTAAGAAGAGTAGAATCTTGGGGGCTTGTAGGCGATGAAACTGATGCACTGCA
CTTGACGGACGTTGTCAAAGCCAATAACCCTGATGAATGCGTCGGGGTATTCCTTCTTAGCCTCCTCAATCTCCTGAATCACCTGAGATGAGTAGTCACA
TTCCTTTGACAATTGTTCGTTACTCATATCAGGCAGTGATGGGGAAACCAGCGGAAGATTTGAGGCCAGTGAATGGTGCTACCATGCTAGCTTGAGCAGG
GGAAGCACTGTTCACAGAGGCAACAGCGGCGGATGAGAGAATGGATGAAGCCATTTATGCCTCTTTTTTTTCTTGGAGGATTAGAAGGATTTACTAATAG
CTAGTAGAGTAGTTTGAAGAAGCTCTTGGTGTTGAGTCTGAGAGGCATT