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Detailed information on CNT30506608


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640117Nicotiana attenuataNymphaea colorata70.5890.3894.821814reverse complement
CNT30318212Nicotiana attenuataCorylus avellana72.4169.2395.971861reverse complement
CNT30519047Nicotiana attenuataJuglans regia71.0594.4695.671826forward
CNT30702609Nicotiana attenuataQuercus lobata70.9399.0895.671823forward
CNT30283192Nicotiana attenuataChenopodium quinoa71.1386.895.791828reverse complement
CNT3021658Nicotiana attenuataCitrullus lanatus68.6499.3896.151764reverse complement
CNT30628671Nicotiana attenuataVigna unguiculata70.762.1695.321817reverse complement
CNT30200773Nicotiana attenuataPisum sativum70.6661.8195.321816forward
CNT3047196Nicotiana attenuataPrunus dulcis71.9877.4495.141850forward
CNT30638988Nicotiana attenuataCapsicum annuum72.6598.0197.481867reverse complement
CNT30544402Nicotiana attenuataBrassica napus70.787.195.61817forward
CNT30309594Nicotiana attenuataCamelina sativa70.3993.6395.631809reverse complement
CNT3083352Nicotiana attenuataBrassica juncea70.798.9795.61817reverse complement
CNT30422282Nicotiana attenuataPapaver somniferum72.455995.111862reverse complement
CNT3025914Nicotiana attenuataPopulus trichocarpa69.5399.6195.911787forward
CNT30326143Nicotiana attenuataAsparagus officinalis70.7459.0395.651818forward
CNT3036478Nicotiana attenuataCucumis melo69.2258.5295.841779forward
CNT30334962Nicotiana attenuataCynara cardunculus72.149.493.741853forward

Expression of CNT30506608

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKFQRLPGPVGQGYKLVEYISVARVRPRTSKGITDLLLPQTSAA*

>peptide 2 (48 aa)
LCFKRSTSPPARTANGARGAGFQFSIPWRFSRRGSLITRHARERARRG*

>peptide 3 (35 aa)
CVSKEAQVPPRAPRTGREGQAFNLVFLGAFRAGVR*

>peptide 4 (44 aa)
MLSQLFVFHKSKNFTSDYEIRSPPTVPVNHYSDPEGQRNRTEIL*

>peptide 5 (51 aa)
MPIAFTESESPSILVVDQAIAGRSEDDLGHNCSFWFTPHVEREGRKATDCA*

>peptide 6 (49 aa)
MDFSRRRGQRTAHVAAIRTFHRIIQSVGATGSVYKGQGRSQRELMTRAY*

>peptide 7 (28 aa)
MCRTYTCLADASQQQPQHATRSHVLLPMP

>peptide 8 (30 aa)
MMRRRHDGRVIRRVIMNHRSNGQSSRRPFI*

>peptide 9 (32 aa)
MKYDRPRLSLLIITPIPKANVIGPKSYNVITC*

>peptide 10 (34 aa)
MPNTTHVPHVHLPRRCKPTTAPTRDAQPCVVADAN

>peptide 11 (43 aa)
MIRFNGLLATSRAANRPRRRDPNISPDHSIGRSDGQCVQRAGT*

>peptide 12 (55 aa)
MHPFQKSGFVARISARITTVIRVVDTIKQTITDLMSHSQFHSLTLFILTHAWLNL*

>peptide 13 (50 aa)
MRARTSLLKQGSNLATHAEHYSCAARTLASPMQANNSPNTRRAAMCCCRCQ

Sequence

>CNT30506608
TTGTGTTTCAAAAGAAGCACAAGTCCCCCCGCGCGCACCGCGAACGGGGCGCGAGGGGCAGGCTTTCAATTTAGTATTCCTTGGCGCTTTTCGCGCCGGG
GTTCGTTAATCACCCGGCACGCACGCGAGCGCGCGCGCCGGGGATAGGAGGGAGCCGCACGGACGGAGGCCGAAGCACCCCGGCCGCGCCGCTCCCCAGT
GTTTAAACAAGTTCGCGGGTCGTTCTGCTTTTGCAGGTTTCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCT
AAATGATAAGGTTCAATGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCCGAACATTTCACCGGATCATTCAATCGGTAGGAG
CGACGGGCAGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATC
TATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA
TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCCGCGAAGGGATACCTCCGCATAGC
TAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATTGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA
GAGCTCCCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGATTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCC
GTCAATTCCTTTAAGTTTCAGCCTTGTGACCATACTCCCCCCGTTACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCC
GCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGTTATCTGATCGTCTTCGAGCCGCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGG
CAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGATCGCCCCCGACTGTCCCTGTTAATCATTACTCCG
ATCCCGAAGGCCAACGTAATAGGACCGAAATCCTATAATGTTATAACATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAA
GTAACAGCGCTGGAGGCACGACCCGGCCAATTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGACGAGACGACCGGTGCACACCTAGGGCGGACCGGCCGG
CCCATCCCAAAGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGTTGGAATTACCGTGGCTGCTGGCACCAGACTTGCCCTC
CAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCATAGAGCCCGGTATTGTTATTTAATGTCACTACCTCCCCGTGTCAGG
ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGTCGTTTCTCAGGCTCCCTCTCTGAAATCGAACCCTAATTCTCCGTCACCCGTCACCA
CCGTGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGAAGAAATTTGAATGATGCGTCGCCGGCACGATGGTCGTGTGATCCGTCGAGTTATCATGA
ATCATCGCAGCAACGGGCAGAGCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCGCTAGAATTAC
TACGGTTATCCGAGTAGTAGATACCATCAAACAAACTATAACGGATTTAATGAGCCATTCGCAGTTTCACAGTCTGACTTTGTTCATACTTACACATGCA
TGGCTTAATCTTTAAGACAAGCATATGACTACTAGATGGATCAACCAGGTAGCATTCCTCATTGACGCCGGCGTCGCATGAGCATGGCCGACCCAAAGGG
CACGACCAAGTCCAAGACGAGCACGACCGTCATTCGTAAGGAGCATTCTTTGGGCAGATAGGAGCCAATGAAGACCCCATGCCCATTGCGTTTACGGAAT
CCGAGAGTCCGAGCATACTAGTCGTGGACCAAGCCATCGCAGGGCGAAGCGAGGACGACCTGGGACACAACTGCAGCTTTTGGTTCACCCCGCACGTCGA
ACGCGAGGGGCGAAAGGCAACCGATTGTGCTTGATAATGCCATGGCATTAGGCATGCAACACAGAAAACCGACGCCGGACAAGCCTAATTTGCGCTTGTG
CCATGACTGAGATGGCATGCGGGCTAGGACGTCGCTGCTCAAGCAGGGATCCAACCTAGCCACACATGCCGAACACTACTCATGTGCCGCACGTACACTT
GCCTCGCCGATGCAAGCCAACAACAGCCCCAACACGCGACGCGCAGCCATGTGTTGTTGCCGATGCCAAC