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Detailed information on CNT30506406


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 4e-14

BLAST vs NONCODE:
NONVVIT003033, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378673Nicotiana attenuataArabidopsis thaliana27.957.2698.32714forward
CNT30283003Nicotiana attenuataChenopodium quinoa35.9996.4497.83921forward
CNT3020470Nicotiana attenuataCitrullus lanatus13.2162.7198.82338forward
CNT30655407Nicotiana attenuataRosa chinensis96.673.9597.652472reverse complement
CNT30346087Nicotiana attenuataEragrostis tef31.8578.8297.67815reverse complement
CNT30557400Nicotiana attenuataPanicum hallii39.7474.1395.081017reverse complement

Expression of CNT30506406

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGTNLQGYHLLWPDLPIFSQLQFTAPAPLKGGGLKAYLIIRERFGTLTNVLDF

>peptide 2 (68 aa)
MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVSVWGTVSSPGGSPSQFEVFSWKFQPC*

>peptide 3 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNLSLSLPSHTSVTL*

>peptide 4 (46 aa)
NRRTTEPLGPSSTPGCDESTSRCQTTPSIRALGSHQPVIPGVPLIR*

>peptide 5 (34 aa)
MTTVATINRLVTMAGRYALLSRDPYSNQKTKGPY*

Sequence

>CNT30506406
GAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGG
AGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGCTC
GACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCTTAGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAG
GCATCCGCCCCAGATAAACTACCCACCTCGCAGTGTCCCGCCTCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCA
GGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATTAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTACCGTCT
AGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTT
ATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTCCTTCCGACCTTC
CAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTC
CTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC
TTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTTGACTATGA
CAACAGTCGCGACTATAAACAGACTCGTGACTATGGCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGATAGGTCGCCAAACTACGACCGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCA
AGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAG
CAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACGCAGAAAACCTT
CCACTGGCAGGCGATCGTGTTTTTCACAGGATTTTTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTCTTGTCACCAAAAACCTTCCCCG
ATTGACAGAACGTTCCGCTACTGTCACTTGAAAAAGCAGCTTTCAAGGTCTCGTCGCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGG
AGCTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGATTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCTACTAAGTGA
TTGCTTAGGGACCTTAGCGTACGATCTTGGCTGTTCCCTCTCAACTTTGGATCTTAGCACCCAAAAAGTCTGTCTGTACAAACAATCTAGGCCTGTATTC
GAAGTTTCCCTGGGGTTGGTAAGGCGAAATGAGGCCACCCTAGCCTATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTT
TGCGAAAAACCAACTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCC
TGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTCAAATAGGAAGAACTAGAAGATTCCACCTTTGGAAAGCGCCTACACCTAA
TGGCTTAAGCCGCTGTTCCCATTTCCTCGCTGACCCATCATGCAAAAGGTATGCCGTTAGAGTGAGTGCGCTTTACATAAAGTAAAGGCTCTAAGCTCCG
CTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACATTTCCCTCACGGTACTTGTACGCTATCGG
TCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCCCCTTTCTCGCGTAAAAGCGATCAGAATTCGAACACGCCGCGTTTTACTGGGAAGGATCGAACCAT
GGGAACGAATCTACAGGGCTATCACCTTCTTTGGCCAGATCTTCCAATCTTTTCACAATTACAGTTCACTGCGCCCGCTCCTTTAAAGGGCGGTGGCTTG
AAAGCTTACCTTATTATTAGAGAAAGGTTTGGAACCCTAACCAACGTTTTGGATTTTGG