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Detailed information on CNT30506399


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 4e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Nicotiana attenuataSetaria italica80.0635.3380.38265forward
CNT30316147Nicotiana attenuataCorylus avellana99.744.382.73330forward
CNT30703138Nicotiana attenuataQuercus lobata82.4852.185.71273forward
CNT30499549Nicotiana attenuataCoffea canephora83.3856.3382.97276forward
CNT30277485Nicotiana attenuataChenopodium quinoa90.3335.0584.62299forward
CNT30729539Nicotiana attenuataCorchorus capsularis67.9833.4884225forward
CNT3068683Nicotiana attenuataQuercus suber82.4855.4984.98273forward
CNT30524728Nicotiana attenuataPhaseolus vulgaris75.8346.4880.88251forward
CNT30486152Nicotiana attenuataOlea europaea78.5528.7386.54260forward
CNT30223417Nicotiana attenuataHordeum vulgare50.4573.5782.04167forward
CNT3084565Nicotiana attenuataVigna radiata75.8314.8581.67251forward
CNT30539234Nicotiana attenuataBrassica napus95.7734.6480.76317forward
CNT30143836Nicotiana attenuataMedicago truncatula96.6854.8984.69320forward
CNT30261302Nicotiana attenuataBrassica rapa97.8962.6780.86324forward
CNT30447453Nicotiana attenuataSaccharum spontaneum66.4738.3980.91220forward
CNT30653881Nicotiana attenuataRosa chinensis52.5716.2979.89174forward
CNT30343308Nicotiana attenuataEragrostis tef64.0577.3781.13212forward
CNT30360575Nicotiana attenuataLactuca sativa91.8450.4184.21304forward
CNT30570592Nicotiana attenuataVitis vinifera60.4261.9284200forward
CNT30105598Nicotiana attenuataOryza longistaminata42.320.3280140forward
CNT30574680Nicotiana attenuataOryza barthii42.315.2880.71140forward
CNT30579496Nicotiana attenuataEchinochloa crusgalli80.0667.7780.38265forward
CNT30115589Nicotiana attenuataOryza nivara42.39.8180.71140forward
CNT30604168Nicotiana attenuataOryza punctata42.350.7281.43140forward
CNT30550386Nicotiana attenuataOryza brachyantha42.350.9180140forward
CNT30332943Nicotiana attenuataCynara cardunculus72.2145.8784.1239forward
CNT3064271Nicotiana attenuataSelaginella moellendorffii37.7622.7384.8125forward

Expression of CNT30506399

Peptides detected in this lncRNA

>peptide 1 (58 aa)
PMGLTLPQYVSFCGCSNGSPYTSLVLVSKNRAPTLLANPSMFNVPTTLDIIVLTGLCL*

>peptide 2 (53 aa)
MLVMNRGSRASKVIDLVNFKQKWLNDVVSNELKPRVTEMVHNILFATGEKVIND

Sequence

>CNT30506399
CACCGATGGGATTAACATTGCCCCAGTATGTCTCCTTCTGTGGATGTTCCAATGGATCACCGTACACTTCGCTGGTGCTCGTTAGCAAAAACCGCGCACC
GACTCTTTTAGCTAATCCCAGCATGTTCAATGTCCCCACCACATTAGATATAATAGTCTTGACGGGGTTATGCTTGTAATGAACAGGGGAAGCAGGGCAA
GCAAGGTGATAGATCTGGTCAACTTCAAGCAAAAGTGGCTCAACGACGTCGTGTCGAATGAGCTCAAACCTAGGGTTACCGAAATGGTGCATAACATTCT
CTTTGCGACCGGTGAAAAAGTTATCAACGAC