Detailed information on CNT30506346


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7M1L0|CB23C_PEA, E-value = 7e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616538Nicotiana attenuataSesamum indicum80.1950.3182.59247forward
CNT30510148Nicotiana attenuataSolanum lycopersicum49.3535.8590.13152forward

Expression of CNT30506346

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MDKIWAPALNQTASPNLTPFFERISGKTQPKAPSMAQRQWITSSSRFLANVSGSAES

>peptide 2 (31 aa)
AKWVEGTSWIDLVKTFTKWASTNSISFNQAH*

>peptide 3 (66 aa)
GQVGRRHLLDRSCQDLHQVGLHQLYILQSSPLGQLGKPKWRGCSGHGQDLGSCLEPNCFTEFNTVL*

Sequence

>CNT30506346
GGCCAAGTGGGTCGAAGGCACCTCCTGGATAGATCTTGTCAAGACCTTCACCAAGTGGGCCTCCACCAACTCTATATCCTTCAATCAAGCCCATTAGGAC
AACTTGGCAAGCCCAAATGGCGAGGATGCTCTGGGCATGGACAAGATTTGGGCTCCTGCCTTGAACCAAACTGCTTCACCGAATTTAACACCGTTCTTTG
AAAGGATTTCGGGAAAGACACAACCCAAAGCACCAAGCATGGCCCAACGACAGTGGATCACTTCAAGTTCACGGTTTCTGGCGAATGTTTCTGGGTCAGC
TGAGAGTC