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Detailed information on CNT30506309


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708589Nicotiana attenuataGlycine max23.7412.683.61122reverse complement
CNT30635928Nicotiana attenuataCapsicum annuum80.7493.8993.98415reverse complement
CNT30585847Nicotiana attenuataMusa acuminata33.4626.3481.4172reverse complement
CNT30229743Nicotiana attenuataAnanas comosus14.230.9389.0473reverse complement
CNT30119130Nicotiana attenuataCitrus clementina46.8925.0882.57241reverse complement

Expression of CNT30506309

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MWINGRMREREKKNTNDIKFQYVRSMSNLIKGSVIKHQYAFIP*

>peptide 2 (40 aa)
MNLLIEIEQKIKSFEPIKTEKIDSRTNFILSSIVEFGPNH*

>peptide 3 (66 aa)
MGTTELVNAKDSIEKGILMIHWSGWRNEPEINSCIRRSEKSRVNPTNEIGIERVNIRPRKLFLLQNL

Sequence

>CNT30506309
AGGAAATCTGATTCTAAGTTGTAAAGCAAAATAGACAAAAAAGATGTGGATAAATGGAAGGATGAGAGAAAGAGAGAAAAAGAATACCAATGATATAAAA
TTCCAATATGTAAGGTCTATGAGTAATCTCATAAAAGGCAGTGTAATAAAGCATCAATACGCATTCATACCATAATAAAATGAATCTTCTTATAGAAATA
GAACAAAAAATCAAGAGCTTCGAGCCAATAAAGACTGAGAAGATTGACTCAAGAACCAATTTCATTCTGAGCTCCATTGTAGAATTCGGACCTAACCATT
AAGTAAGAAGTGATGGGAACGACGGAACTTGTGAATGCAAAAGATTCTATTGAAAAAGGAATCTTAATGATTCACTGGTCGGGATGGCGGAACGAACCAG
AGATTAATTCATGTATTCGGAGATCTGAGAAGTCACGAGTTAACCCTACAAATGAAATAGGGATTGAAAGAGTCAATATTCGCCCGCGAAAACTTTTTTT
ATTGCAAAATTTAG