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Detailed information on CNT30506305


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-148

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315749Nicotiana attenuataCorylus avellana73.4942.6785.86693forward
CNT30546134Nicotiana attenuataIpomoea triloba71.7983.5885.08677forward
CNT30513431Nicotiana attenuataJuglans regia73.4971.1585.14693forward
CNT30500332Nicotiana attenuataCoffea canephora70.4185.4684.34664forward
CNT30275114Nicotiana attenuataChenopodium quinoa73.2898.7185.53691forward
CNT30380449Nicotiana attenuataManihot esculenta73.0670.3883.89689forward
CNT30630785Nicotiana attenuataVigna unguiculata72.1179.7285.59680forward
CNT30488054Nicotiana attenuataOlea europaea69.9976.8383.79660forward
CNT30712768Nicotiana attenuataGlycine max72.6469.7685.55685forward
CNT3094992Nicotiana attenuataSolanum tuberosum72.8559.0287.77687forward
CNT30568721Nicotiana attenuataActinidia chinensis73.1750.7483.77690forward
CNT30510145Nicotiana attenuataSolanum lycopersicum73.1748.4686.09690forward
CNT30311067Nicotiana attenuataCamelina sativa74.1355.3485.41699forward
CNT3074679Nicotiana attenuataBrassica juncea73.4976.5784.42693forward
CNT3025177Nicotiana attenuataPopulus trichocarpa73.1770.5583.77690forward
CNT30111662Nicotiana attenuataFicus carica72.5350.5985.67684forward
CNT30334104Nicotiana attenuataCynara cardunculus69.8828.9384.07659forward
CNT30114619Nicotiana attenuataEutrema salsugineum72.9663.6484.74688forward

Expression of CNT30506305

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSSRRSAFLPSASAPSARWTPFECCSLQGCDHLPTAFLQRSASAGLGESPPCPGSWP*

>peptide 2 (81 aa)
DFETSIDKAHTTTTRNRHSQSTQHNDITNRQPRNHHGDGGQGEGLTLSGYCSQPRSFHPRAASQQRSTSAGPVGYPPCPGS*

>peptide 3 (37 aa)
MVSELSTSKVMVFPVNVFTKICIPPLSLSTKCKVDSF*

Sequence

>CNT30506305
CGACTTCGAGACCTCAATAGACAAAGCACATACAACCACAACTAGAAACAGACACAGCCAATCAACACAACACAACGACATCACCAACAGGCAACCTAGA
AACCACCACGGAGACGGAGGACAAGGTGAAGGGTTGACTCTTTCTGGATATTGTAGTCAGCCAAGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAAGAT
CAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGCTTTTACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTTTTC
CCAGTCAATGTCTTCACGAAGATCTGCATTCCTCCCCTCAGCCTCAGCACCAAGTGCAAGGTGGACTCCTTTTGAATGTTGTAGTCTGCAAGGGTGCGAC
CATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGA
ACTTTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGGTTTTGACGAAGATCTGCATACCACCACGGAGACGGAGGACAAGTGAAGGGTAGACTCCTTC
TGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATTT
TGGCTTTTACGTTGTCGATTGTGTCGGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTGTAATTATATAAT
AACAACAACAAACAATTAAAACAATGAACTTCAAAATTAGGGCTTTAGATACCCAAATCGTTGATTCAATAAAAAAGAACTGCTAAAGCGAGAAATTGAG
GAAATTCTCAAACCTTGAGAGAGAAATATGAAGCCGATGAAAG