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Detailed information on CNT30506119


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 6e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Nicotiana attenuataSetaria italica52.3836.9982.78209forward
CNT30269243Nicotiana attenuataChenopodium quinoa90.7339.7481.22362forward
CNT30727660Nicotiana attenuataCorchorus capsularis45.1132.9182.22180forward
CNT30195835Nicotiana attenuataPisum sativum62.9198.8283.27251forward
CNT30312353Nicotiana attenuataCamelina sativa99.7597.0779.4398forward
CNT30263629Nicotiana attenuataBrassica rapa68.1747.4779.41272forward
CNT30468540Nicotiana attenuataSaccharum spontaneum56.1425.8781.7224forward
CNT30140910Nicotiana attenuataLolium perenne38.142.5882.89152forward
CNT3016764Nicotiana attenuataZea mays59.1541.9982.63236forward
CNT30341749Nicotiana attenuataEragrostis tef45.6140.982.97182forward
CNT30366570Nicotiana attenuataSorghum bicolor53.8835.1382.79215forward
CNT30354836Nicotiana attenuataLactuca sativa39.127.0483.97156forward
CNT30573979Nicotiana attenuataVitis vinifera84.7157.9882.54338forward
CNT30149777Nicotiana attenuataBrachypodium distachyon53.6323.2482.71214forward
CNT30176441Nicotiana attenuataVigna angularis74.1948.9382.09296forward

Expression of CNT30506119

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MWESTMDWLGNMLDLSDCSQESWGYKWGKW

>peptide 2 (60 aa)
MQEKWDYMMEKWDYNLVRWGYMKARWGCKKVRWGCMKVKWGCKMAKWGCKMEKWGCRQAK*

Sequence

>CNT30506119
CTGTAACTGGGAGATGTTGGGCTGTAACCAGGGGAGGTAGGACTGTATGCAGGAGAAGTGGGACTATATGATGGAGAAGTGGGACTATAACTTGGTGAGG
TGGGGCTATATGAAGGCGAGGTGGGGCTGTAAGAAGGTGAGGTGGGGCTGTATGAAGGTGAAGTGGGGCTGTAAGATGGCGAAGTGGGGCTGTAAGATGG
AGAAGTGGGGCTGTAGGCAGGCGAAGTAGGGCTATAGCTAGGCGATGTTGGGCTATAACTAGGAGATGTAGGGCTATAGCTCGGAGATGTTGGACTATAA
CTAGGTGATGTGGGAGAGTACGATGGACTGGTTGGGGAATATGCTGGACTTGTCGGACTGTAGCCAGGAGAGCTGGGGCTATAAGTGGGGGAAGTGGGG