« Back to Nicotiana attenuata search


Detailed information on CNT30505772


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 2e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3077091Nicotiana attenuataBrassica juncea99.7964.495.36474forward
CNT30265842Nicotiana attenuataBrassica rapa99.7982.2995.15474forward
CNT30206551Nicotiana attenuataHelianthus annuus99.3786.1396.19472forward

Expression of CNT30505772

Peptides detected in this lncRNA

>peptide 1 (42 aa)
PVTMKFQRLPGPVGQGYKLIEYISVARVRPRTYKGITDLLLP*

Sequence

>CNT30505772
TCCCCGTCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAAACTCATTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATA
TAAGGGCATCACAGACCTGTTATTGCCCTAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCCGCGAAGGGATACCTTCGCATAGCTA
GTTAGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCA
TAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCATCTTCGAGCCCCCA
ACTTTTGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAAC