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Detailed information on CNT30505560


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 4e-13

BLAST vs NONCODE:
NONOSAT000196, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524649Nicotiana attenuataSetaria italica53.8736.1397.981191reverse complement
CNT30641383Nicotiana attenuataNymphaea colorata62.5144.2494.211382reverse complement
CNT30632346Nicotiana attenuataVigna unguiculata61.3348.4898.671356reverse complement
CNT3094274Nicotiana attenuataSolanum tuberosum9.5971.8699.53212forward
CNT30185187Nicotiana attenuataSecale cereale62.9139.3397.21391reverse complement
CNT30299053Nicotiana attenuataTriticum aestivum62.9138.8296.841391reverse complement
CNT30401406Nicotiana attenuataTriticum turgidum62.9147.5297.121391reverse complement
CNT30569655Nicotiana attenuataActinidia chinensis62.4238.7597.971380reverse complement
CNT30147396Nicotiana attenuataMedicago truncatula61.3345.5898.31356reverse complement
CNT30660235Nicotiana attenuataTriticum dicoccoides42.61100.1197.35942forward
CNT30140161Nicotiana attenuataLolium perenne62.9140.8697.561391reverse complement
CNT3017954Nicotiana attenuataZea mays63.1836.8796.781397reverse complement
CNT30605068Nicotiana attenuataGossypium raimondii51.774.898.431143forward
CNT30216578Nicotiana attenuataKalanchoe fedtschenkoi61.1540.5998.821352reverse complement
CNT30715685Nicotiana attenuataMalus domestica golden20.2636.8187.05448forward
CNT30682011Nicotiana attenuataTriticum urartu44.14100.197.85976reverse complement
CNT30721631Nicotiana attenuataTriticum spelta62.9140.0597.051391reverse complement
CNT30429739Nicotiana attenuataPapaver somniferum57.839.7393.821278reverse complement
CNT30571858Nicotiana attenuataVitis vinifera62.6439.9699.061385forward
CNT3056076Nicotiana attenuataAmborella trichopoda53.15193.021174reverse complement
CNT30331625Nicotiana attenuataDioscorea rotundata10.5873.5897.01234reverse complement
CNT30499372Nicotiana attenuataDigitaria exilis59.7938.8997.581322reverse complement
CNT30603680Nicotiana attenuataOryza punctata62.9135.2497.481391reverse complement
CNT3039925Nicotiana attenuataMarchantia polymorpha14.7965.9395.72327reverse complement

Expression of CNT30505560

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNLSLSLPSHTSVTL*

>peptide 2 (38 aa)
SHLAVLTSLAYRSSVQKPRPRTCIEKDFPRRSSSSLPT*

>peptide 3 (34 aa)
MTTVATINRLVTMAGRYALLSRDPYSNQKTKGPY*

>peptide 4 (54 aa)
FTPRGAYISRLSKFCSKTSSENLYREGFPAAQQFFLTNLAARRCYWHNNRYTIG*

>peptide 5 (68 aa)
MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVSVWGTVSSPGGSPSQFEVFSWKFQPC*

Sequence

>CNT30505560
TTCACACCTCGCGGTGCTTACATCTCTCGCCTATCGAAGTTCTGTTCAAAAACCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGT
TCTTCCTTACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTAGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCT
CGCAGTTCTCCCTTTAACACCAATGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCAAAC
CCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCC
CGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGTC
AGGCAGGCTTATACCATTACGCTCACGAGCAGAATCTTAGCTTGAGCCTACCTTCGCACACCTCTGTTACTCTTTAGGAGGCATCCGCCCCAGATAAACT
ACCCACCTCGCAGTGTCCCGCCTCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCA
CCACCTCCCACCTATCCTACACATTCGATTAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATC
TTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCACATCGCTACTTATGCGACAAGGAATTTCGCT
ACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAG
ACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAG
CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTT
GGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTTGACTATGACAACAGTCGCGACTATAAAC
AGACTCGTGACTATGGCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGAAGATAGGTCGCCAAACTAC
GACCGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAAG
AGAGTGAGGGGAAGAGGGGGCAGCCCTTGGCCCGATCATCCAATTCGCTCCAACAAACAGGCATGGTTCTGTAGTCAAAGCAACTTCGTCACTTTCGTGT
ACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACGCAGAAAACCATCCACTGGCAGGCGATCGTGT
TTTTCACAGGATTTTTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTCTTGTCACCAAAAACCTTCCCCGATTGACAGAACGTTCCGCTA
CTGACACTTGAAAAAGCAGCTTTCAAGGTCTCGTCACTTCGAAGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATT
ACGCTTTCTTCAAAGGATGGCTTCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGT
ACGATCTGGGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAGGCGAAATGAGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATAC
GCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTTTTTTGCCACATACGTG
GGTTCGGTCCT