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Detailed information on CNT30505430


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 4e-14

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671914Nicotiana attenuataSetaria viridis34.1348.1795.63801forward
CNT30730372Nicotiana attenuataCorchorus capsularis59.0171.5896.91385forward
CNT30632407Nicotiana attenuataVigna unguiculata57.8650.2897.281358reverse complement
CNT30300122Nicotiana attenuataTriticum aestivum45.3349.3395.111064forward
CNT30221907Nicotiana attenuataHordeum vulgare39.9778.196.48938forward
CNT30543268Nicotiana attenuataBrassica napus39.4140.3198.05925forward
CNT30435868Nicotiana attenuataAegilops tauschii36.1760.997.29849forward
CNT30670388Nicotiana attenuataTriticum dicoccoides45.3337.9595.021064forward
CNT30140120Nicotiana attenuataLolium perenne45.3332.0495.31064forward
CNT30207637Nicotiana attenuataHelianthus annuus58.870.5597.541380forward
CNT30628241Nicotiana attenuataDaucus carota56.9249.4899.11336reverse complement
CNT30689137Nicotiana attenuataTriticum urartu37.6273.496.38883forward
CNT30359520Nicotiana attenuataLactuca sativa58.7654.1698.621379reverse complement
CNT30434643Nicotiana attenuataPapaver somniferum32100.9494.67751forward
CNT3057903Nicotiana attenuataAmborella trichopoda49.7748.7593.241168reverse complement
CNT30108930Nicotiana attenuataOryza longistaminata37.0337.1497.7869forward

Expression of CNT30505430

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMYQGSSDSPKRRDLESCFFKCQ*

>peptide 2 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

>peptide 3 (30 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA*

Sequence

>CNT30505430
CTTTAAAGGAGCGGGCGCAGTGAACTGTAATTGTGAAAAGATTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCC
TTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTAC
AAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCTTAGAG
CCTTTACTTTATGTAAAGCGCACTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGC
GCTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGA
CCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCA
GTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCTCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCT
AGATCGTTTGTACAGACAGACTTTTTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGG
AAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCG
AAAATGTATCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCTGCTTTTTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCGGGGAAGGTT
TTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGTTTTCTG
CGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACA
GAACCATGCCTGTCTGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAA
AGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAAAGGCGAAACTCTCGGTCGTAGTTTGGCGACCTATCTTCAGTAGGGGCC
TTTAGTCTTTTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCACGAGTCTGTTTATAGTCGCGACTGTTGTCATAGTCAAC
AAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATAC
TAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCAC
ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAA
GGAGAAGTGTTATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGAGAAGTGTTATAAGCTTTGAATGGAAGCCCCG
GTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTC
CGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTAACTATAGCTTCACAGTGACA
ACCTTAATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGGACCGA
TCATTCGGGGGGAGGCGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCTAAG
ATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACC